Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (Callithrix jacchus) is a dataset published in Genes (2023). On theSindex it has a DataRank of 0.399, placing it in the top 45.9% of the data-sharing corpus. It has been cited 9 times, with 6 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 46% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All assembly sequence sources are available under NCBI BioProject PRJNA566173.”
The paper provides a persistent identifier (NCBI BioProject accession) for the study's own data, which fits the accepted PID scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“All data will be available at NCBI SRA under NCBI BioProjects PRJNA566173 and PRJNA955237”
NCBI SRA is a named data repository (listed in re3data) that will hold the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All assembly sequence sources are available under NCBI BioProject PRJNA566173.”
The dataset identifier (BioProject accession) appears only in the body text (Methods and Data Availability Statement), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All data will be available at NCBI SRA under NCBI BioProjects PRJNA566173 and PRJNA955237, and also at https://mcc.ohsu.edu/”
The statement points to a repository record with accessions. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“We identified a total of 19,137,198 SNVs across the 84 marmosets, including 378,827 multiallelic SNVs and 2,078,752 singletons”
The dataset's content (numbers of SNVs, indels, etc.) is described in running prose without an itemised inventory or section heading. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All data will be available at NCBI SRA under NCBI BioProjects PRJNA566173 and PRJNA955237”
The stated route to the data (NCBI SRA with BioProject accessions) carries no precondition such as embargo, registration, or application. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
No explicit access-level label is applied to the data. [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from marmosets, not human subjects, and no gatekeeper is named; the data are openly deposited.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“All data will be available at NCBI SRA under NCBI BioProjects PRJNA566173 and PRJNA955237”
The statement gives a timing (future availability on publication) but no commitment to how long the data will persist. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“a joint-called VCF file was generated”
VCF (Variant Call Format) is an open, community-standard file format for genomic variants. [majority verdict 'yes' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data/metadata standard (e.g., MIAME, Dublin Core) is named; only tools and formats are mentioned.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“the human genome (GRChg38.p12)”
The paper references an external resource (the human reference genome assembly) with a versioned identifier (GRChg38.p12). [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not assign a reuse license to the data; the CC BY license applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1)”
The genome assembly is assigned a version string (cj1700_1.1) and a RefSeq accession (GCF_009663435.1), pinning the snapshot. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper uses standard tools and does not mention any custom code or provide a locator for it.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01-HG002385”
The paper lists specific NIH grant numbers (e.g., R01-HG002385) attached to funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Single-molecule, real-time (SMRT) sequences were generated using the Pacific Biosciences (PacBio) Sequel instrument”
The paper names specific instruments and software versions used to produce the data (e.g., PacBio Sequel, GATK v4.2.2.0). [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table S1: Marmoset Samples Sequenced”
Variable definitions are provided in supplementary tables within the article, but no documentation object (e.g., README, codebook) is said to accompany the data deposit. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.345
From this paper's citation signal
Citation Network Contribution
0.0534
From 4 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 6 citers.
US National Institutes of Health
Grant: R01-HG002385
US National Institutes of Health
Grant: U24-MH123422
US National Institutes of Health
Grant: P51-OD111106
US National Institutes of Health
Grant: RR15459-01
US National Institutes of Health
Grant: RR020141-01
NCRR NIH HHS
Grant: C06 RR015459
NCRR NIH HHS
Grant: C06 RR020141
NHGRI NIH HHS
Grant: R01 HG002385
NIMH NIH HHS
Grant: U24 MH123422
NIH HHS
Grant: P51 OD011106
National Institutes of Health
Grant: 5U24MH123422-04
Collaborative Expansion of Marmoset Colonies for Neuroscience Research
National Institutes of Health
Grant: 5R01HG002385-15
Sequence and Assembly of Segmental Duplications
National Institutes of Health
Grant: 1C06RR020141-01
EXTRAMURAL RES FACIL CONST: AIDS
National Institutes of Health
Grant: 1C06RR015459-01
EXTRAMURAL REGIONAL FACILITIES CONSTRUCTION
FWCI
1.67
Citation Percentile
0.8%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals