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Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18

eLife(2020)10.7554/elife.51325Source: DataRank Database

Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18 is a research paper published in eLife (2020). On theSindex it has a DataRank of 1.1. It has been cited 45 times, with 27 citing works in its 1-hop citation network.

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1.1DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access45 citations · 27 citing works in its network

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Linked data & code

geo cellosaurus gen refsnp igsr doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE140241 GSE139945 GSE139809 GSE32483 GSE82727

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (23 grants)OA: goldTopics (80)IDs (PubMed, PMC)Annotations (6)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 54%Citation Network 46%

Base Score Contribution

0.574

From this paper's citation signal

Citation Network Contribution

0.488

From 21 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 27 citers.

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Authors (13)

Kaylia Duncan ORCID,Annika Helverson ORCID,Priyanka Kumari ORCID,Camille Mumm ORCID,Yao Xiao ORCID

Live enrichment

PubMed:32031521 PMC:PMC7039683

National Natural Science Foundation of China

Grant: 81771057

NIDCR NIH HHS

Grant: R00 DE025060

National Institute of Dental and Craniofacial Research

Grant: DE024427

NIDCR NIH HHS

Grant: R01 DE023575

NIDCR NIH HHS

Grant: K99 DE025060

NIDCR NIH HHS

Grant: R01 DE028599

National Natural Science Foundation of China

Grant: 81400477

National Institute of Dental and Craniofacial Research

Grant: DE025060

National Institute for Health Research (NIHR)

Grant: DE027362

NIDCR NIH HHS

Grant: U01 DE024427

NIDCR NIH HHS

Grant: R01 DE027362

NIDCR NIH HHS

Grant: R56 DE023575

Natural Science Foundation of Hubei Province

Grant: 2017CFB515

National Institute of Dental and Craniofacial Research

Grant: DE028599

National Institutes of Health

Grant: DE023575

NCI NIH HHS

Grant: P30 CA086862

National Institutes of Health

Grant: 1R01DE023575-01A1

Dissecting the transciptional network governing differentiation of periderm

National Institutes of Health

Grant: 1P30CA086862-01

Core--Clinical trials support group

National Institutes of Health

Grant: 1R01DE028599-01

A Single-Cell Resolution Enhancer Atlas of Craniofacial Development

National Institutes of Health

Grant: 1R01DE027362-01A1

Functional tests of non-coding DNA variants associated with risk for orofacial clefting

National Institutes of Health

Grant: 5U01DE024427-04

Genomic, Transgenic and Knockout Resources for Craniofacial Enhancer Studies

National Institutes of Health

Grant: 7R01DE027362-05

Functional tests of non-coding DNA variants associated with risk for orofacial clefting.

National Institutes of Health

Grant: 5K99DE025060-02

Genetics of Craniofacial Disorders and Related Phenotypes

goldLicense: cc-by

publisherhttps://doi.org/10.7554/elife.51325

repositoryhttps://www.osti.gov/servlets/purl/1628914

repositoryhttps://doaj.org/article/54a09bab8c194db6a5efec438255ab05

repositoryhttps://escholarship.org/uc/item/5fm0w1h9

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/7039683

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

PalateAnimalsZebrafishHumansGreen Fluorescent ProteinsRegulatory Sequences, Nucleic AcidPolymorphism, Single NucleotideKeratin-18Keratin-8Enhancer Elements, GeneticGenome-Wide Association Study

Keywords

HumanMousePeridermZebrafishsystems biologycomputational biologydevelopmental biologyMachine LearningOrofacial CleftEnhancersBiomedical and clinical sciencesRegulatory Sequences, Nucleic Acid3105 Genetics (for-2020)31 Biological sciences (for-2020)2.1 Biological and endogenous factorsAnimals (mesh)Biology (General)32 Biomedical and Clinical Sciences (for-2020)PediatricHumans (mesh)Generic health relevance (hrcs-hc)QRSingle NucleotideBiological SciencesKeratin-8 (mesh)Nucleic Acid (mesh)Green Fluorescent Proteins (mesh)Enhancer Elements, GeneticMedicineGenome-Wide Association Study (mesh)Computational and Systems BiologySingle Nucleotide (mesh)Enhancer ElementsQH301-705.5ScienceGreen Fluorescent Proteins0601 Biochemistry and Cell Biology (for)610Polymorphism, Single NucleotideGenetic42 Health sciences (for-2020)GeneticsAnimalsHumansDental/Oral and Craniofacial DiseaseKeratin-18 (mesh)PolymorphismNucleic AcidKeratin-18Genetics (rcdc)PalateKeratin-8Human GenomeHealth sciences2.1 Biological and endogenous factors (hrcs-rac)Dental/Oral and Craniofacial Disease (rcdc)Human Genome (rcdc)Zebrafish (mesh)Palate (mesh)Congenital Structural AnomaliesGenetic (mesh)Biochemistry and Cell BiologyGeneric health relevanceRegulatory SequencesGenome-Wide Association Study

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