Little skate genome provides insights into genetic programs essential for limb-based locomotion is a dataset published in eLife (2022). On theSindex it has a DataRank of 0.465, placing it in the top 40.8% of the data-sharing corpus. It has been cited 9 times, with 8 citing works in its 1-hop citation network. Its calibrated FAIR score is 29/100.
Ranks in the top 41% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
The paper provides persistent identifiers from accepted schemes (BioProject and GEO accessions). [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
Named repositories NCBI BioProject and GEO are listed as holders. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
The dataset identifiers appear only in the body text, not in the reference list. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
The statement points to repository records with accession numbers. [downgraded to 'partial' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The genome of Leucoraja erinacea was assembled using a combination of PacBio long read and Illumina short read data (Figure 1A and B).”— not found in the paper; verdict downgraded
The dataset content is described in running prose only, without an itemised inventory of files, variables, or samples. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
The data are deposited in public repositories with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The genome sequence of little skate is archived on NCBI BioProject under accession PRJNA747829. The RNA-seq data of chick br-MN and mouse limb MNs, and ATAC-seq data of little skate are available from the NCBI Gene Expression Omnibus database under accession number GSE180337.”— not found in the paper; verdict downgraded
The paper describes where the data can be accessed but does not label the access level with a standard term like 'open access'. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not human-subject or sensitive, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about how long the data will persist or when they become available.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“genes associated with the GO term 'DNA-binding transcription factor activity'”
Gene Ontology is a community standard vocabulary used in the analysis. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The RNA-seq raw data of little skate pec-MNs and tail-SC used in differential gene expression analysis available under accession number PRJNA414974”
A previously published dataset is cited with an accession number.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the article license does not apply to the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“This study does not involve previously unreported computer code or algorithms.”
Code is explicitly stated as not available.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Ministry of Science and ICT, South Korea 2021010004”
Award numbers are provided for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The sequencing was performed on the PacBio Sequel system.”
Specific instruments and software are named for data production.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Supplementary file 2. DEG results”
Variable-level definitions are provided in the supplementary tables, which are part of the article rather than a documentation object shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.345
From this paper's citation signal
Citation Network Contribution
0.120
From 7 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 8 citers.
Ministry of Science and ICT, South Korea
Grant: 2021010004
National Research Foundation of Korea
Grant: NRF-2019R1I1A2A01041345
Ministry of Oceans and Fisheries
Grant: 20180430
National Institutes of Health
Grant: 1S10OD023423-01
The PacBio Sequel for Single Molecule, Real-Time, Long Read Sequencing
National Institutes of Health
Grant: R35 NS116858
NIH HHS
Grant: S10 OD023423
National Institutes of Health
Grant: 1R35NS116858-01
Genetic Control of Circuit Assembly in the Vertebrate Spinal Cord
Fields of Study
MeSH Terms
Keywords