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Structure-guided isoform identification for the human transcriptome

eLife(2022)10.7554/elife.82556Source: DataRank Database

Structure-guided isoform identification for the human transcriptome is a research paper published in eLife (2022). On theSindex it has a DataRank of 1.4. It has been cited 50 times, with 30 citing works in its 1-hop citation network.

N/A

1.4DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access50 citations · 30 citing works in its network

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Linked data & code

Data availability

Repositories this paper deposited data in (declared in PubMed).

SRASRR5756467 SRR18337982
figshare10.6084/m9.figshare.21802476v1

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (7 grants)Impact (FWCI 3.61)OA: goldTopics (28)Linked Datasets (8)DataCite Reuse (8)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 44%Citation Network 56%

Base Score Contribution

0.590

From this paper's citation signal

Citation Network Contribution

0.764

From 22 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 30 citers.

Protein language models learn evolutionary statistics of interacting sequence motifs
Proceedings of the National Academy of Sciences2024112 citations36 referencesContributes 0.131
Protein language models learn evolutionary statistics of interacting sequence motifs
bioRxiv (Cold Spring Harbor Laboratory)202426 citations28 referencesContributes 0.118
Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms
PLoS ONE20234 citations25 referencesContributes 0.064
IsoTools 2.0: Software for Comprehensive Analysis of Long-read Transcriptome Sequencing Data
Journal of Molecular Biology20254 citations26 referencesContributes 0.062
Structure prediction of novel isoforms from uveal melanoma by AlphaFold
Scientific Data20237 citations36 referencesContributes 0.058

Authors (9)

Sooyoung Cha ORCID,Ales Varabyou ORCID,Natalia Rincon ORCID,Sukhwan Park ORCID,Ilia Minkin ORCID

Live enrichment

PubMed:36519529 OpenAlex:https://openalex.org/W4311579410

National Institutes of Health

Grant: R01-HG006677

National Institutes of Health

Grant: R35-GM130151

National Research Foundation of Korea

Grant: 2019R1-A6A1-A10073437

National Research Foundation of Korea

Grant: 2020M3-A9G7-103933

National Research Foundation of Korea

Grant: 2021-R1C1-C102065

National Research Foundation of Korea

Grant: 2021-M3A9-I4021220

Seoul National University

Grant: Creative-Pioneering Researchers Program

FWCI

3.61

Citation Percentile

0.9%

Influential Citations

Citation Trend

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://doi.org/10.7554/elife.82556

GOLDhttps://doi.org/10.7554/elife.82556

publisherhttps://doi.org/10.7554/elife.82556

publisherhttps://cdn.elifesciences.org/articles/82556/elife-82556-v3.pdf

publisherhttps://cdn.elifesciences.org/articles/82556/elife-82556-v3.xml

Fields of Study

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsMachine Learning in BioinformaticsMedicineBiologyComputer Science

MeSH Terms

HumansGenomeSequence Analysis, RNAProtein IsoformsMolecular Sequence AnnotationTranscriptome

Keywords

Computational biologyHuman proteome projectGenomeHuman genomeProteomeGene AnnotationGene isoformBiologyGenome projectAnnotationGeneFunction (biology)Gene predictionIdentification (biology)GeneticsProteomics

Additional file 1 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.24465127.v1figshare

Additional file 1 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.24465127figshare

Additional file 2 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.24465317.v1figshare

Additional file 2 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.24465317figshare

Additional file 4 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.26634012.v1figshare

Additional file 4 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.26634012figshare

Additional file 3 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.26634009.v1figshare

Additional file 3 of CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

10.6084/m9.figshare.26634009figshare