Dark kinase annotation, mining, and visualization using the Protein Kinase Ontology is a dataset published in PeerJ (2023). On theSindex it has a DataRank of 0.538, placing it in the top 36.2% of the data-sharing corpus. It has been cited 12 times, with 7 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 36% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“https://prokino.uga.edu/downloads.html”
The paper gives a web address (URL) for the data, not a persistent identifier scheme (DOI, Handle, ARK, URN, or repository accession).
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The protein kinase ontology (ProKinO)’s current OWL file and previous versions are available at: https://prokino.uga.edu/downloads.html”
The named host is a project website (prokino.uga.edu), not a curated repository listed in re3data or FAIRsharing.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The protein kinase ontology (ProKinO)’s current OWL file and previous versions are available at: https://prokino.uga.edu/downloads.html”
The dataset identifier (URL) appears only in the body text, not in the reference list as a bibliographic entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The following information was supplied regarding data availability: The protein kinase ontology (ProKinO)’s current OWL file and previous versions are available at: https://prokino.uga.edu/downloads.html . Future versions of the ontology also will be placed at the same address. The ontology browser is available at https://prokino.uga.edu/browser . Users can save the results of queries in diagrams or other formats such as CSV.”
The data availability statement points to a URL (project website) rather than a repository record with an accession or DOI.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The current version of ProKinO (version 65), includes 842 classes, 31 objects and 67 data properties, and over seven million individuals (knowledge graph nodes).”
The dataset content is described in running prose (a sentence) rather than an itemised inventory (section, table, or list).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The protein kinase ontology (ProKinO)’s current OWL file and previous versions are available at: https://prokino.uga.edu/downloads.html”
The data are available at a direct download link with no stated precondition (no embargo, registration, or request required).
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The following information was supplied regarding data availability: The protein kinase ontology (ProKinO)’s current OWL file and previous versions are available at: https://prokino.uga.edu/downloads.html . Future versions of the ontology also will be placed at the same address. The ontology browser is available at https://prokino.uga.edu/browser . Users can save the results of queries in diagrams or other formats such as CSV.”
The paper does not apply any explicit access-level label to the data; it only provides a URL and states the data are available, which is an action description that requires inference. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject; the ontology is openly available without any gatekeeper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Future versions of the ontology also will be placed at the same address.”
The paper states that the data are available now and that future versions will be placed at the same address, but does not specify a retention period or permanent archival claim. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“OWL file”— not found in the paper; verdict downgraded
The data format is OWL, an open, community-standard format (W3C standard). [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a specific data or metadata community standard (e.g., MIAME, ISA-Tab, GO) that the data conforms to. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper references external resources (e.g., KLIFS, COSMIC) but does not provide specific identifiers (accessions, DOIs, RRIDs) for those resources in the text.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the CC BY license mentioned applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The current version of ProKinO (version 65)”
A version token (version 65) is explicitly stated for the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not provide a locator (URL, DOI, or repository) for the study's own code; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by the National Institutes of Health (U01CA239106 and R35 GM139656) to Natarajan Kannan.”
Award/grant numbers are provided along with the funder name.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Protégé ontology editor”
The paper names specific tools and software used to create the data (Protégé, Java, Jena, Perl, KLIFS API). [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The organization of the schema after these modifications is available at https://prokino.uga.edu/about .”
The paper provides a URL for the schema documentation but does not state that a documentation object (README, codebook, data dictionary) is shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.385
From this paper's citation signal
Citation Network Contribution
0.153
From 4 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 7 citers.
National Institutes of Health
Grant: U01CA239106 and R35 GM139656
NCI NIH HHS
Grant: U01 CA239106
NIGMS NIH HHS
Grant: R35 GM139656
National Institutes of Health
Grant: 3U01CA239106-02S1
A data analytics framework for mining the dark kinome
National Institutes of Health
Grant: 1R35GM139656-01
Unlocking sequence-structure-function-disease relationships in large protein super-families
FWCI
1.61
Citation Percentile
0.8%
Citation Trend
Fields of Study
MeSH Terms
Keywords