Stewart Shuman

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 46 papers. Top paper: “Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis”.

Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis

Nucleic Acids Research(2023)10.1093/nar/gkad063

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0.464DataRank · unranked

21 citations

Ana M. Sánchez, Matthew M. Miele, Beate Schwer, Stewart Shuman, Angad Garg

Genetic interactions and transcriptomics implicate fission yeast CTD prolyl isomerase Pin1 as an agent of RNA 3′ processing and transcription termination that functions via its effects on CTD phosphatase Ssu72

Nucleic Acids Research(2020)10.1093/nar/gkaa212

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0.434DataRank · unranked

17 citations

Angad Garg, Stewart Shuman, Beate Schwer, Ana M. Sánchez

Activities and genetic interactions of fission yeast Aps1, a Nudix-type inositol pyrophosphatase and inorganic polyphosphatase

mBio(2024)10.1128/mbio.01084-24

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0.401DataRank · unranked

10 citations

Ana M. Sánchez, Beate Schwer, Isabel Prucker, Nikolaus Jork, Henning J. Jessen +2 more

NMR solution structures of Runella slithyformis RNA 2′-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity

Nucleic Acids Research(2021)10.1093/nar/gkab241

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0.383DataRank · unranked

8 citations

Ankan Banerjee, Swathi Dantuluri, Stewart Shuman, Ranajeet Ghose, Sébastien Alphonse

Activity and substrate specificity of Candida, Aspergillus, and Coccidioides Tpt1: essential tRNA splicing enzymes and potential antifungal targets

RNA(2021)10.1261/rna.078660.120

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0.373DataRank · unranked

11 citations

Beate Schwer, Leonora Abdullahu, Masad J. Damha, Stewart Shuman, Swathi Dantuluri

Inactivation of fission yeast Erh1 de-represses pho1 expression: evidence that Erh1 is a negative regulator of prt lncRNA termination

RNA(2020)10.1261/rna.076463.120

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0.364DataRank · unranked

8 citations

Ana M. Sánchez, Stewart Shuman, Beate Schwer

Genetic suppressor screen identifies Tgp1 (glycerophosphocholine transporter), Kcs1 (IP 6 kinase), and Plc1 (phospholipase C) as determinants of inositol pyrophosphate toxicosis in fission yeast

mBio(2023)10.1128/mbio.03062-23

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0.345DataRank · unranked

9 citations

Ana M. Sánchez, Angad Garg, Stewart Shuman, Beate Schwer, Lauren Bednor

Inorganic polyphosphate abets silencing of a sub-telomeric gene cluster in fission yeast

PubMed(2023)10.17912/micropub.biology.000744

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0.208DataRank · unranked

3 citations

Angad Garg, Beate Schwer, Stewart Shuman, Ana M. Sánchez

Kinetic and structural insights into the requirement of fungal tRNA ligase for a 2′-phosphate end

RNA(2024)10.1261/rna.080120.124

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0.104DataRank · unranked

1 citations

Stewart Shuman, Shreya Ghosh

Distinctive roles of translesion polymerases DinB1 and DnaE2 in diversification of the mycobacterial genome through substitution and frameshift mutagenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483125

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0.104DataRank · unranked

1 citations

Shreya Ghosh, Oyindamola Adefisayo, John A. Buglino, Stewart Shuman, Michael S. Glickman +1 more

Structure–activity relationships at a nucleobase-stacking tryptophan required for chemomechanical coupling in the DNA resecting motor-nuclease AdnAB

Nucleic Acids Research(2021)10.1093/nar/gkab1270

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0DataRank · unranked

6 citations

Aviv Meir, Juncheng Wang, Dinshaw J. Patel, Eric C. Greene, Stewart Shuman +1 more

Structure and mechanism of Mycobacterium smegmatis polynucleotide phosphorylase

RNA(2021)10.1261/rna.078822.121

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0DataRank · unranked

14 citations

Shreya Ghosh, M. Jason de la Cruz, Yehuda Goldgur, Stewart Shuman, Mihaela-Carmen Unciuleac

Transcriptional profiling of fission yeast RNA polymerase II CTD mutants

RNA(2021)10.1261/rna.078682.121

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0DataRank · unranked

10 citations

Ana M. Sánchez, Beate Schwer, Stewart Shuman, Angad Garg

Oligomeric quaternary structure of Escherichia coli and Mycobacterium smegmatis Lhr helicases is nucleated by a novel C-terminal domain composed of five winged-helix modules

Nucleic Acids Research(2021)10.1093/nar/gkab145

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0DataRank · unranked

6 citations

Juncheng Wang, Dinshaw J. Patel, Stewart Shuman, Garrett M. Warren

Activities and Structure-Function Analysis of Fission Yeast Inositol Pyrophosphate (IPP) Kinase-Pyrophosphatase Asp1 and Its Impact on Regulation of pho1 Gene Expression

mBio(2022)10.1128/mbio.01034-22

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0DataRank · unranked

23 citations

Angad Garg, Nikolaus Jork, Henning J. Jessen, Beate Schwer, Stewart Shuman +1 more

Distinctive roles of translesion polymerases DinB1 and DnaE2 in diversification of the mycobacterial genome through substitution and frameshift mutagenesis

Nature Communications(2022)10.1038/s41467-022-32022-8

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0DataRank · unranked

20 citations

Shreya Ghosh, Oyindamola Adefisayo, John A. Buglino, Stewart Shuman, Michael S. Glickman +1 more

Structures of RNA ligase RtcB in complexes with divalent cations and GTP

RNA(2022)10.1261/rna.079327.122

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0DataRank · unranked

9 citations

Swathi Dantuluri, Stewart Shuman, Agata Jacewicz

Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States

mBio(2022)10.1128/mbio.03087-22

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0DataRank · unranked

8 citations

Yehuda Goldgur, Nikolaus Jork, Henning J. Jessen, Beate Schwer, Stewart Shuman +1 more

Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase–pyrophosphatases that act via a covalent aspartyl–phosphate intermediate

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101851

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0DataRank · unranked

1 citations

Agata Jacewicz, Stewart Shuman, Ana M. Sánchez

Pleiotropic roles for mycobacterial DinB2 in frameshift and substitution mutagenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.14.503212

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0DataRank · unranked

0 citations

Shreya Ghosh, Oyindamola Adefisayo, James Bean, Richa Gupta, Stewart Shuman +2 more

Activities, substrate specificity, and genetic interactions of fission yeast Siw14, a cysteinyl-phosphatase-type inositol pyrophosphatase

mBio(2023)10.1128/mbio.02056-23

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0DataRank · unranked

11 citations

Beate Schwer, Nikolaus Jork, Henning J. Jessen, Stewart Shuman, Ana M. Sánchez

Roles for mycobacterial DinB2 in frameshift and substitution mutagenesis

eLife(2023)10.7554/elife.83094

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0DataRank · unranked

7 citations

Shreya Ghosh, Allison Fay, Oyindamola Adefisayo, Richa Gupta, Stewart Shuman +2 more

Structural basis for Tpt1-catalyzed 2′-PO 4 transfer from RNA and NADP(H) to NAD +

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2312999120

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0DataRank · unranked

7 citations

Swathi Dantuluri, Stewart Shuman, Agata Jacewicz

Duf89 abets lncRNA control of fission yeast phosphate homeostasis via its antagonism of precocious lncRNA transcription termination

RNA(2023)10.1261/rna.079595.123

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0DataRank · unranked

5 citations

Angad Garg, Beate Schwer, Stewart Shuman, Ana M. Sánchez

Mycobacterial helicase Lhr abets resistance to DNA crosslinking agents mitomycin C and cisplatin

Nucleic Acids Research(2023)10.1093/nar/gkac1222

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0DataRank · unranked

5 citations

Anam Ejaz, Allison Fay, Michael S. Glickman, Stewart Shuman, Garrett M. Warren

Fission yeast poly(A) polymerase active site mutation Y86D alleviates therad24Δasp1-H397Asynthetic growth defect and up-regulates mRNAs targeted by MTREC and Mmi1

RNA(2023)10.1261/rna.079722.123

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0DataRank · unranked

0 citations

Beate Schwer, Stewart Shuman, Angad Garg

Factors governing the transcriptome changes and chronological lifespan of fission yeast during phosphate starvation

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.105718

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0DataRank · unranked

12 citations

Ana M. Sánchez, Beate Schwer, Stewart Shuman, Angad Garg

Efn1 and Efn2 are extracellular 5'-nucleotidases induced during the fission yeast response to phosphate starvation

mBio(2024)10.1128/mbio.02992-24

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0DataRank · unranked

4 citations

Ana M. Sánchez, Mara Monetti, Beate Schwer, Stewart Shuman, Aleksei Innokentev

Characterization of tRNA splicing enzymes RNA ligase and tRNA 2′-phosphotransferase from the pathogenic fungi Mucorales

RNA(2024)10.1261/rna.079911.123

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0DataRank · unranked

4 citations

Swathi Dantuluri, Agata Jacewicz, Ana M. Sánchez, Leonora Abdullahu, Masad J. Damha +3 more

Suppression of inositol pyrophosphate toxicosis and hyper-repression of the fission yeast PHO regulon by loss-of-function mutations in chromatin remodelers Snf22 and Sol1

mBio(2024)10.1128/mbio.01252-24

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0DataRank · unranked

2 citations

Aleksei Innokentev, Ana M. Sánchez, Angad Garg, Stewart Shuman, Beate Schwer

Identification, characterization, and structure of a tRNA splicing enzyme RNA 5′-OH kinase from the pathogenic fungi Mucorales

RNA(2024)10.1261/rna.080247.124

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0DataRank · unranked

2 citations

Gina Wimberly-Gard, Agata Jacewicz, Beate Schwer, Stewart Shuman, Shreya Ghosh

Deletions initiated by the vaccinia virus TopIB protein in yeast

DNA repair(2024)10.1016/j.dnarep.2024.103664

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0DataRank · unranked

1 citations

Samantha Shaltz, Lyudmila Yakovleva, Stewart Shuman, Sue Jinks-Robertson, Jang-Eun Cho

Structure and in vivo psoralen DNA crosslink repair activity of mycobacterial Nei2

mBio(2024)10.1128/mbio.01248-24

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0DataRank · unranked

1 citations

Stewart Shuman, Garrett M. Warren

Chemical synthesis of 2″OMeNAD+ and its deployment as an RNA 2′-phosphotransferase (Tpt1) ‘poison’ that traps the enzyme on its abortive RNA-2′-PO4-(ADP-2″OMe-ribose) reaction intermediate

Nucleic Acids Research(2024)10.1093/nar/gkae695

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0DataRank · unranked

1 citations

Shreya Ghosh, Renata Kasprzyk, Marcel Brakonier, M. G. Hanna, Andreas Marx +2 more

Structures of RNA phosphotransferase Tpt1 reveal distinct binding modes for an RNA 2′-PO4splice junction versus a 5′-PO4mononucleotide

RNA(2025)10.1261/rna.080444.125

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0DataRank · unranked

2 citations

Masad J. Damha, Stewart Shuman, Agata Jacewicz

In vivo nucleotide excision repair by mycobacterial UvrD1 requires ATP hydrolysis but does not depend on cysteine disulfide-mediated dimerization and DNA unwinding

Nucleic Acids Research(2025)10.1093/nar/gkaf269

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0DataRank · unranked

0 citations

Stewart Shuman, Garrett M. Warren

Structural basis for sensitivity and acquired resistance of fungal cap guanine-N7 methyltransferases to the antifungal antibiotic sinefungin

Nucleic Acids Research(2025)10.1093/nar/gkaf538

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0DataRank · unranked

0 citations

Beate Schwer, Steven C. Almo, Stewart Shuman, Agnidipta Ghosh, Daniel J. Nilson

Mycobacterial DNA polymerase I: activities and crystal structures of the POL domain as apoenzyme and in complex with a DNA primer-template and of the full-length FEN/EXO–POL enzyme

Nucleic Acids Research(2020)10.1093/nar/gkaa075

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0DataRank · unranked

16 citations

Yehuda Goldgur, Stewart Shuman, Shreya Ghosh

Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation

Nucleic Acids Research(2020)10.1093/nar/gkaa238

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0DataRank · unranked

5 citations

Yehuda Goldgur, Stewart Shuman, Mihaela-Carmen Unciuleac

A genetic screen for suppressors of hyper-repression of the fission yeast PHO regulon by Pol2 CTD mutation T4A implicates inositol 1-pyrophosphates as agonists of precocious lncRNA transcription termination

Nucleic Acids Research(2020)10.1093/nar/gkaa776

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0DataRank · unranked

33 citations

Stewart Shuman, Beate Schwer, Angad Garg

Substrate analogs that trap the 2′-phospho-ADP-ribosylated RNA intermediate of the Tpt1 (tRNA 2′-phosphotransferase) reaction pathway

RNA(2020)10.1261/rna.074377.119

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0DataRank · unranked

7 citations

Leonora Abdullahu, Annum Munir, Adam Katolik, Masad J. Damha, Stewart Shuman +1 more

Pseudomonas putida MPE, a manganese-dependent endonuclease of the binuclear metallophosphoesterase superfamily, incises single-strand DNA in two orientations to yield a mixture of 3′-PO4 and 3′-OH termini

Nucleic Acids Research(2020)10.1093/nar/gkaa1214

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0DataRank · unranked

1 citations

Anam Ejaz, Lucas Repeta, Stewart Shuman, Shreya Ghosh

Genetic screen for suppression of transcriptional interference identifies a gain-of-function mutation in Pol2 termination factor Seb1

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2108105118

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0DataRank · unranked

19 citations

Angad Garg, Agata Jacewicz, Stewart Shuman, Beate Schwer

Structure of 3′-PO4/5′-OH RNA ligase RtcB in complex with a 5′-OH oligonucleotide

RNA(2021)10.1261/rna.078692.121

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0DataRank · unranked

18 citations

Yehuda Goldgur, Stewart Shuman, Ankan Banerjee

Genetic screen for suppression of transcriptional interference reveals fission yeast 14–3–3 protein Rad24 as an antagonist of precocious Pol2 transcription termination

Nucleic Acids Research(2021)10.1093/nar/gkab1263

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0DataRank · unranked

13 citations

Stewart Shuman, Beate Schwer, Angad Garg

Structure-function analysis of fission yeast cleavage and polyadenylation factor (CPF) subunit Ppn1 and its interactions with Dis2 and Swd22

PLoS Genetics(2021)10.1371/journal.pgen.1009452

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0DataRank · unranked

12 citations

Ana M. Sánchez, Angad Garg, Beate Schwer, Stewart Shuman, Bradley Benjamin