🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Kevin Y. Yip

Chinese University of Hong Kong

ORCID: 0000-0001-5516-9944

Also affiliated with Sanford Burnham Prebys Medical Discovery Institute, Discovery Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
10.4Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Genome Biology(2012)10.1186/gb-2012-13-9-r48
Top 3%
6.2DataRank
Top 3%269 citations

Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje +7 more

Papers

Driven by 21 papers — median percentile 96. Top paper: “Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors”.

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Genome Biology(2012)10.1186/gb-2012-13-9-r48
Top 3%
6.2DataRank
Top 3%269 citations

Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje +7 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w
Top 5%
4.1DataRank
Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Machine learning and genome annotation: a match meant to be?

Genome Biology(2013)10.1186/gb-2013-14-5-205
N/A
3.8DataRank · unranked
103 citations

Chao Cheng, Grigorios Georgolopoulos, Kevin Y. Yip

Architecture of the human regulatory network derived from ENCODE data

Nature(2012)10.1038/nature11245
N/A
1.1DataRank · unranked
1548 citations

Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon-Kiu Yan, Chao Cheng +58 more

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Genome Research(2012)10.1101/gr.136838.111
N/A
0.779DataRank · unranked
179 citations

Roger Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky +17 more

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y
N/A
0.692DataRank · unranked
17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

PSGL-1 attenuates early TCR signaling to suppress CD8+ T cell progenitor differentiation and elicit terminal CD8+ T cell exhaustion

Cell Reports(2023)10.1016/j.celrep.2023.112436
N/A
0.533DataRank · unranked
34 citations

Dennis C. Otero, Eun‐Ah Bae, Christopher J. Stairiker, Ashley B. Palete, Hannah A. Faso +16 more

Extrachromosomal DNA associates with poor survival across a broad spectrum of childhood solid tumors

medRxiv(2025)10.1101/2025.07.22.24308163
N/A
0.208DataRank · unranked
3 citations

Sunita Sridhar, Eugene Yui‐Ching Chow, Rishaan Kenkre, Jonathan Kirkland, Aditi Dutta +23 more

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157
N/A
0.190DataRank · unranked
2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

DNA methylation markers for kidney function and progression of diabetic kidney disease

Nature Communications(2023)10.1038/s41467-023-37837-7
N/A
0DataRank · unranked
57 citations

Claudia H.T. Tam, Hongbo Liu, Samantha E. Day, Cadmon K.P. Lim, Wing Yee So +13 more

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w
N/A
0DataRank · unranked
0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

ICI efficacy information portal: a knowledgebase for responder prediction to immune checkpoint inhibitors

NAR Cancer(2023)10.1093/narcan/zcad012
N/A
0DataRank · unranked
5 citations

Daniel Rebibo, Jian Cao, Simon Yat-Man Mok, Neel Patel, Po-Cheng Tseng +3 more

Linked-Pair Long-Read Sequencing Strategy for Targeted Resequencing and Enrichment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.564243
N/A
0DataRank · unranked
0 citations

Christina Huan Shi, Dharma Varapula, Eleanor Young, Rachel Ehrlich, Yilin Wang +5 more

Histone chaperone HIRA, promyelocytic leukemia protein, and p62/SQSTM1 coordinate to regulate inflammation during cell senescence

Molecular Cell(2024)10.1016/j.molcel.2024.08.006
N/A
0DataRank · unranked
17 citations

Xue Lei, Christina Huan Shi, Rouven Arnold, Marcos G. Teneche, Karl N. Miller +18 more

Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

Nature Methods(2020)10.1038/s41592-020-0907-8
N/A
0DataRank · unranked
120 citations

Mengting Gu, Emrah Gumusgoz, Landon L. Chan, Koon‐Kiu Yan, Joel Rozowsky +20 more

A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment

Scientific Reports(2024)10.1038/s41598-024-56402-w
N/A
0DataRank · unranked
0 citations

Christina Huan Shi, Dharma Varapula, Eleanor Young, Rachel Ehrlich, Yilin Wang +5 more

Overcoming artificial structures in resolution-enhanced Hi-C data by signal decomposition and multi-scale attention

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.21.619560
N/A
0DataRank · unranked
0 citations

K. Li, Chiara Nicoletti, Prem Puri, Cao Qin, Kevin Y. Yip +1 more

Inactivation of Histone Chaperone HIRA Unmasks a Link Between Normal Embryonic Development of Melanoblasts and Maintenance of Adult Melanocyte Stem Cells

Aging Cell(2025)10.1111/acel.70070
N/A
0DataRank · unranked
2 citations

Rouven Arnold, Karthic Swaminathan, Kathryn Gilroy, Alexander T. Wenzel, Anthony B. Lagnado +16 more

Regulatory roles of three-dimensional structures of chromatin domains

Genome biology(2025)10.1186/s13059-025-03659-7
N/A
0DataRank · unranked
1 citations

Qin Cao, Savio Ho-Chit Chow, Chiara Nicoletti, Prem Puri, Huating Wang +3 more

Developing foundations for biomedical knowledgebases from literature using large language models – A systematic assessment

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.07.042
N/A
0DataRank · unranked
1 citations

Zhenghao Zhang, Jiamin Chen, Daniel Rebibo, Haoran Wu, Sin-Hang Fung +6 more

Commonly used software tools produce conflicting and overly-optimistic AUPRC values

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.02.578654
N/A
0DataRank · unranked
1 citations

Miao Chen, Zhenghao Zhang, Cathy Sin‐Hang Fung, Ran Wang, Yizhen Chen +6 more