Tomas Gedeon

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 25 papers. Top paper: “Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions”.

Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions

International Journal of Bifurcation and Chaos(2021)10.1142/s0218127421300329

N/A

0.312DataRank · unranked

7 citations

Tomas Gedeon, William Duncan

An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum

Science(2020)10.1126/science.aba4357

N/A

0DataRank · unranked

92 citations

Francis C. Motta, Garima Chopra, J. Kathleen Moch, Robert R. Nerem, Bree Cummins +8 more

Multi-parameter exploration of dynamics of regulatory networks

Biosystems(2020)10.1016/j.biosystems.2020.104113

N/A

0DataRank · unranked

22 citations

Tomas Gedeon

Using extremal events to characterize noisy time series

Journal of Mathematical Biology(2020)10.1007/s00285-020-01471-4

N/A

0DataRank · unranked

10 citations

Bree Cummins, Robert R. Nerem, Lauren M. Smith, Steven B. Haase, Tomas Gedeon +1 more

Multistability in the epithelial-mesenchymal transition network

BMC Bioinformatics(2020)10.1186/s12859-020-3413-1

N/A

0DataRank · unranked

43 citations

Bree Cummins, Tomas Gedeon, Ying Xin

Analysis of Dynamics of a Biphasic Isothermal DNA Amplification Reaction

SIAM Journal on Applied Mathematics(2020)10.1137/19m1268434

N/A

0DataRank · unranked

2 citations

Stephanie E. McCalla, Tomas Gedeon, Danielle Ciesielski

Limitation by a shared mutualist promotes coexistence of multiple competing partners

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.22.055517

N/A

0DataRank · unranked

4 citations

Tomas Gedeon, Ross P. Carlson, William R. Harcombe, Sarah P. Hammarlund

Limitation by a shared mutualist promotes coexistence of multiple competing partners

Nature Communications(2021)10.1038/s41467-021-20922-0

N/A

0DataRank · unranked

29 citations

Tomas Gedeon, Ross P. Carlson, William R. Harcombe, Sarah P. Hammarlund

Rational design of complex phenotype via network models

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009189

N/A

0DataRank · unranked

14 citations

Tomas Gedeon, Shane Kepley, Konstantin Mischaikow, Marcio Gameiro

Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities

SIAM Journal on Applied Dynamical Systems(2021)10.1137/21m1398331

N/A

0DataRank · unranked

10 citations

Tomas Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka, William Duncan

Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities

arXiv (Cornell University)(2021)10.48550/arxiv.2103.17184

N/A

0DataRank · unranked

0 citations

Tomas Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka, William Duncan

Joint realizability of monotone Boolean functions

Theoretical Computer Science(2022)10.1016/j.tcs.2022.04.045

N/A

0DataRank · unranked

16 citations

Bree Cummins, Tomas Gedeon, Peter Crawford-Kahrl

Modeling Transport Regulation in Gene Regulatory Networks

Bulletin of Mathematical Biology(2022)10.1007/s11538-022-01035-1

N/A

0DataRank · unranked

6 citations

Bree Cummins, William Duncan, Tomas Gedeon, Erika Fox

Experimental guidance for discovering genetic networks through hypothesis reduction on time series

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010145

N/A

0DataRank · unranked

3 citations

Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia A. Campione, Marcio Gameiro +4 more

Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation

SIAM Journal on Applied Dynamical Systems(2022)10.1137/21m1456832

N/A

0DataRank · unranked

4 citations

Marcio Gameiro, Tomas Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang +1 more

Environment constrains fitness advantages of division of labor in microbial consortia engineered for metabolite push or pull interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.19.477024

N/A

0DataRank · unranked

1 citations

Kathryn Pintar, Diana R. Schepens, Ashley Schrammeck, Timothy A. Johnson, Alissa Bleem +7 more

Experimental Guidance for Discovering Genetic Networks through Iterative Hypothesis Reduction on Time Series

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489981

N/A

0DataRank · unranked

0 citations

Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia A. Campione, Tomas Gedeon +3 more

Assessing biological network dynamics: Comparing numerical simulations with analytical decomposition of parameter space

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.31.506131

N/A

0DataRank · unranked

0 citations

William Duncan, Mohammed Adil Ibrahim, Mohit Kumar Jolly, Bree Cummins, Tomas Gedeon +1 more

Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space

npj Systems Biology and Applications(2023)10.1038/s41540-023-00289-2

N/A

0DataRank · unranked

6 citations

William Duncan, Mohammed Adil Ibrahim, Mohit Kumar Jolly, Bree Cummins, Tomas Gedeon +1 more

Oscillator death in coupled biochemical oscillators

Mathematics of Control Signals and Systems(2023)10.1007/s00498-023-00348-3

N/A

0DataRank · unranked

0 citations

Bree Cummins, Tomas Gedeon

Multistability and predominant hybrid phenotypes in a four node mutually repressive network of Th1/Th2/Th17/Treg differentiation

npj Systems Biology and Applications(2024)10.1038/s41540-024-00433-6

N/A

0DataRank · unranked

12 citations

Elizabeth Andreas, Harshavardhan BV, Kaushal Grover, Vivek Raj Singh, Kishore Hari +5 more

Subnetwork inclusion and switching of multilevel Boolean networks preserve parameter graph structure and dynamics

Frontiers in Applied Mathematics and Statistics(2024)10.3389/fams.2024.1286957

N/A

0DataRank · unranked

1 citations

Bree Cummins, Tomas Gedeon, William Duncan

Cell Geometry and Membrane Protein Crowding Constrain Escherichia coli Growth Rate, Overflow Metabolism, Respiration, and Maintenance Energy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609071

N/A

0DataRank · unranked

10 citations

Tomas Gedeon, Mauricio Garcia Benitez, Campbell Putnam, William R. Harcombe, Radhakrishnan Mahadevan +2 more

Global Dynamics of Ordinary Differential Equations: Wall Labelings, Conley Complexes, and Ramp Systems

arXiv (Cornell University)(2024)10.48550/arxiv.2412.11078

N/A

0DataRank · unranked

0 citations

Tomas Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka, Bernardo Rivas +3 more

Cellular Economics of Exchanged Metabolites Alter Ratios of Microbial Trading Partners in a Predictable Manner

ACS Synthetic Biology(2025)10.1021/acssynbio.5c00265

N/A

0DataRank · unranked

0 citations

Jeremy M. Chacón, Heejoon Park, Campbell Putnam, Tomas Gedeon, William R. Harcombe +2 more