🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Lindsay Lee

Cleveland Clinic

ORCID: 0000-0001-5591-6233
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile
0.586Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2
Top 40%
0.482DataRank
Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

Papers

Driven by 17 papers — median percentile 41. Top paper: “SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data”.

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature Methods(2021)10.1038/s41592-021-01231-2
N/A
0.688DataRank · unranked
97 citations

Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen +9 more

Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath

Science Advances(2021)10.1126/sciadv.abi4360
N/A
0.510DataRank · unranked
29 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2
Top 40%
0.482DataRank
Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.01.003
N/A
0.165DataRank · unranked
2 citations

Lindsay Lee, Armen Abnousi, Jiawen Chen, Jia Wen, Ming Hu +2 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.502991
N/A
0.165DataRank · unranked
2 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +4 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489471
Top 78%
0.104DataRank
Top 78%1 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +15 more

Parallel Characterization of cis -Regulatory Elements for Multiple Genes Using CRISPRpath

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.19.431931
N/A
0.104DataRank · unranked
1 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Nuclear morphology is shaped by loop-extrusion programs

Nature(2024)10.1038/s41586-024-07086-9
N/A
0DataRank · unranked
31 citations

Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu +9 more

HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets

UNC Libraries(2025)10.17615/3wf1-gk25
N/A
0DataRank · unranked
0 citations

Jia Wen, Yun Li, Armen Abnousi, Ming Hu, Jonathan D. Rosen +2 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

UNC Libraries(2025)10.17615/0hcp-4r09
N/A
0DataRank · unranked
0 citations

Ziyin Chen, Shreya Mishra, Hongyu Yu, Xiaoqi Li, Miao Yu +6 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

UNC Libraries(2025)10.17615/vmcs-0c51
N/A
0DataRank · unranked
0 citations

Caterina Strambio‐De‐Castillia, Lindsay Lee, Shreya Mishra, Bing Ren, Alistair N. Boettiger +10 more

SnapHiC2: A computationally efficient loop caller for single cell Hi-C data

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.05.046
N/A
0DataRank · unranked
22 citations

Lindsay Lee, Armen Abnousi, Miao Yu, Weifang Liu, Le Huang +3 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.16.520793
N/A
0DataRank · unranked
0 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +8 more

Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens

Nature Immunology(2023)10.1038/s41590-022-01402-z
N/A
0DataRank · unranked
28 citations

Lindsay Lee, Hanbin Lu, J. Andrés Valderrama, Elisabet Bjånes, Victor Nizet +4 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

Briefings in Bioinformatics(2023)10.1093/bib/bbad315
N/A
0DataRank · unranked
10 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +6 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Nature Communications(2023)10.1038/s41467-023-40658-3
N/A
0DataRank · unranked
10 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +10 more

Small-molecule-induced epigenetic rejuvenation promotes SREBP condensation and overcomes barriers to CNS myelin regeneration

Cell(2024)10.1016/j.cell.2024.04.005
N/A
0DataRank · unranked
62 citations

Dazhuan Xin, Xiaowen Zhong, Chuntao Zhao, Zhidan Li, Liguo Zhang +29 more