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SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature Methods(2021)10.1038/s41592-021-01231-2Source: DataRank Database

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data is a research paper published in Nature Methods (2021). On theSindex it has a DataRank of 0.688. It has been cited 97 times.

N/A

0.688DataRank · unranked

Scored on demand from live citation data

Open Access97 citations

Cite:

Linked data & code

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (12 grants)Impact (FWCI 4.52)OA: hybridTopics (72)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.688

From this paper's citation signal

Citation Network Contribution

0

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (14)

Armen Abnousi ORCID,Yanxiao Zhang ORCID,Guoqiang Li ORCID,Lindsay Lee ORCID,Ziyin Chen ORCID

Live enrichment

PubMed:34446921 PMC:PMC8440170 OpenAlex:https://openalex.org/W3194691506

U.S. Department of Health & Human Services | National Institutes of Health

Grant: UM1HG011585

U.S. Department of Health & Human Services | National Institutes of Health

Grant: U01DA052713

U.S. Department of Health & Human Services | National Institutes of Health

Grant: R01GM105785

U.S. Department of Health & Human Services | National Institutes of Health

Grant: P50HD103573

U.S. Department of Health & Human Services | National Institutes of Health

Grant: U54DK107977

NHGRI NIH HHS

Grant: R35 HG011922

NIMH NIH HHS

Grant: U19 MH114830

National Institutes of Health

Grant: 5R01GM105785-05

Statistical Methods for RNA-seq Data Analysis

National Institutes of Health

Grant: 5P50HD103573-03

Clinical Translational Research Center for Neurodevelopmental Disorders

National Institutes of Health

Grant: 1U01DA052713-01

Charting the 3D epigenome in human brain development and diseases

National Institutes of Health

Grant: 5U54DK107977-02

San Diego Center for 4D Nucleome Research

National Institutes of Health

Grant: 5UM1HG011585-05

Center for Integrated Multi-modal and Multi-scale Nucleome Research

FWCI

4.52

Citation Percentile

1.0%

Influential Citations

8

Citation Trend

2021

2022

2023

2024

2025

2026

hybridLicense: cc-by

journalhttps://www.nature.com/articles/s41592-021-01231-2.pdf

HYBRIDhttps://www.nature.com/articles/s41592-021-01231-2.pdf

publisherhttps://www.nature.com/articles/s41592-021-01231-2.pdf

publisherhttps://www.nature.com/articles/s41592-021-01231-2

journalhttps://doi.org/10.1038/s41592-021-01231-2

Fields of Study

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomicsEpigenetics and DNA MethylationMedicineComputer ScienceBiology0301 basic medicine0303 health sciences03 medical and health sciencesAlgorithmsAnimalsChromatinChromatin Immunoprecipitation SequencingComputational BiologyData VisualizationDatabases, FactualGene ExpressionHumansMental DisordersMiceMouse Embryonic Stem CellsPolymorphism, Single NucleotidePrefrontal CortexReproducibility of ResultsSequence Analysis, DNASingle-Cell Analysis

MeSH Terms

Mouse Embryonic Stem CellsData VisualizationChromatin Immunoprecipitation SequencingAlgorithmsAnimalsMental DisordersChromatinHumansReproducibility of ResultsGene ExpressionDatabases, FactualPrefrontal CortexSequence Analysis, DNAComputational BiologyPolymorphism, Single NucleotideMiceSingle-Cell Analysis

Keywords

ChromatinComputational biologyChIA-PETPipeline (software)BiologyBenchmark (surveying)Cell typeComputer scienceGeneCellGeneticsChromatin remodelingCartographyDatabases, FactualData VisualizationMental DisordersGene ExpressionPrefrontal CortexReproducibility of ResultsMouse Embryonic Stem CellsSequence Analysis, DNABrief CommunicationPolymorphism, Single NucleotideMiceAnimalsChromatin Immunoprecipitation SequencingHumansSingle-Cell AnalysisAlgorithms

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