Brian A. Yee

Sanford Burnham Prebys Medical Discovery Institute

Also affiliated with University of California San Diego, Center for Genomic Science

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.4Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 42 papers — median percentile 97. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

A large-scale binding and functional map of human RNA-binding proteins

Nature(2020)10.1038/s41586-020-2077-3

Top 3%

5.9DataRank

Top 3%1400 citations

Peter Freese, Henry Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao +34 more

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Nucleic Acids Research(2024)10.1093/nar/gkae216

N/A

0.792DataRank · unranked

23 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Kseniya Malukhina +16 more

Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program

Molecular Cell(2020)10.1016/j.molcel.2020.10.022

N/A

0.723DataRank · unranked

123 citations

Alyssa M. Kaiser, David W. Morgens, Anthony M. Boutelle, José A. Seoane, Eric L. Van Nostrand +16 more

The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression

The Journal of Experimental Medicine(2022)10.1084/jem.20211756

N/A

0.578DataRank · unranked

46 citations

Shengyun Ma, Eleanor S. Kim, Nadia Kurd, Matthew Tsai, Tiffani Tysl +10 more

Scalable and deep profiling of mRNA targets for individual microRNAs with chimeric eCLIP

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.13.480296

N/A

0.571DataRank · unranked

44 citations

Alexander A. Shishkin, Brian A. Yee, Kylie A. Shen, Diana Cox, Samuel S. Park +5 more

A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer

Nature Communications(2023)10.1038/s41467-023-40798-6

N/A

0.546DataRank · unranked

37 citations

Tae Gyu Oh, Stefan Aigner, En‐Ching Luo, Brian A. Yee, Tania Campos +33 more

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis

Life Science Alliance(2020)10.26508/lsa.202000772

N/A

0.510DataRank · unranked

29 citations

Tianyun Long, Yuxin Li, Brian A. Yee, Benjamin S. Cho, Juan E Hernandez +10 more

Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution

Genome Research(2024)10.1101/gr.279176.124

N/A

0.479DataRank · unranked

11 citations

Alexandra Tankka, Daniel A. Lorenz, Tao Yu, Brian A. Yee, Kristopher W. Brannan +4 more

FLARE: a fast and flexible workflow for identifying RNA editing foci

BMC Bioinformatics(2023)10.1186/s12859-023-05452-4

N/A

0.385DataRank · unranked

12 citations

Brian A. Yee, Hugo C. Medina-Muñoz, G Yeo, Eric Kofman

The IFIT2–IFIT3 antiviral complex targets short 5’ untranslated regions on viral mRNAs for translation inhibition

Nature Microbiology(2025)10.1038/s41564-025-02138-w

N/A

0.342DataRank · unranked

8 citations

Candace Todd, B. Cook, Agustina D’Urso, Shivani Khosla, Elena Estrada +19 more

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559000

N/A

0.312DataRank · unranked

7 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Yajie Gu +14 more

Ulcerative Colitis Host-Microbiome Response to Hyperbaric Oxygen Therapy

medRxiv(2022)10.1101/2022.01.14.22269325

N/A

0.165DataRank · unranked

2 citations

Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E. Widjaja +31 more

Short 5’ UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637299

N/A

0.104DataRank · unranked

1 citations

Candace Todd, B. Cook, Agustina D’Urso, Shivani Khosla, Elena Estrada +17 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

Research Square(2022)10.21203/rs.3.rs-1394331/v1

N/A

0DataRank · unranked

2 citations

Joy S. Xiang, Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer +24 more

Transcriptome Regulation by PARP13 in Basal and Antiviral States in Human Cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.520435

N/A

0DataRank · unranked

1 citations

Yoshinari Ando, Stefan Aigner, Brian A. Yee, G Yeo, Anthony K. L. Leung +1 more

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

Nature Communications(2023)10.1038/s41467-023-35932-3

N/A

0DataRank · unranked

45 citations

Bhoomika Mathur, Michael F. Saikali, Ullas V. Chembazhi, Katelyn Toohill, You Jin Song +13 more

RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation

Science Advances(2023)10.1126/sciadv.add6165

N/A

0DataRank · unranked

19 citations

Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang +10 more

Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery

Nucleic Acids Research(2023)10.1093/nar/gkad773

N/A

0DataRank · unranked

17 citations

Justin Wang, Yi Shi, Brian A. Yee, Markus Terrey, Qian Zhang +8 more

In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

Blood Cancer Discovery(2023)10.1158/2643-3230.bcd-22-0086

N/A

0DataRank · unranked

16 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

Data from In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

(2023)10.1158/2643-3230.c.6572000

N/A

0DataRank · unranked

0 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

Data from In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

(2023)10.1158/2643-3230.c.6572000.v2

N/A

0DataRank · unranked

0 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes

Cell Reports(2024)10.1016/j.celrep.2024.114637

N/A

0DataRank · unranked

22 citations

Mei Yuan, Rachel Yan, Lin Yuan, Jonathan J. Wilde, Hailey Eckersberg +23 more

Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size

Neuron(2024)10.1016/j.neuron.2024.04.006

N/A

0DataRank · unranked

15 citations

Jingrong Zhao, Naoto Kubota, Zhelin Li, Y. Amy Lam, Lauren P. Nguyen +10 more

High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues

Nature Communications(2024)10.1038/s41467-024-50363-4

N/A

0DataRank · unranked

8 citations

Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A. Yee +3 more

Transcriptome regulation by PARP13 in basal and antiviral states in human cells

iScience(2024)10.1016/j.isci.2024.109251

N/A

0DataRank · unranked

10 citations

Yoshinari Ando, Stefan Aigner, Brian A. Yee, G Yeo, Anthony K. L. Leung +1 more

Protocol to process crosslinking and immunoprecipitation data into annotated binding sites

STAR Protocols(2024)10.1016/j.xpro.2024.103040

N/A

0DataRank · unranked

1 citations

Grady G. Nguyen, Jack T. Naritomi, Hema Kopalle, Brian A. Yee, Katherine Rothamel +3 more

Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656146

N/A

0DataRank · unranked

0 citations

Karen X. Zhao, Laliv Tadri, Kurt Tamaru, Brian A. Yee, Katherine Rothamel +16 more

Dosage-sensitive RBFOX2 autoregulation promotes cardiomyocyte differentiation by maturing the transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685214

N/A

0DataRank · unranked

0 citations

Feria A. Ladha, Yunxia Wang, Michael A. Trembley, Huimin Yin, Rongbin Zheng +14 more

Large-scale tethered function assays identify factors that regulate mRNA stability and translation

Nature Structural & Molecular Biology(2020)10.1038/s41594-020-0477-6

N/A

0DataRank · unranked

135 citations

Jason L. Nathanson, Frederick E. Tan, Joshua L. Schwartz, Jonathan C. Schmok, Archana Shankar +10 more

Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing

Cell Reports(2020)10.1016/j.celrep.2020.108350

N/A

0DataRank · unranked

43 citations

Kristopher W. Brannan, Kevin Dong, Brian A. Yee, G Yeo, Ryan J. Marina

The mRNA Decay Factor CAR-1/LSM14 Regulates Axon Regeneration via Mitochondrial Calcium Dynamics

Current Biology(2020)10.1016/j.cub.2019.12.061

N/A

0DataRank · unranked

28 citations

Kyung Won Kim, Suhong Xu, Stephen M. Blazie, Brian A. Yee, G Yeo +3 more

TheThermus thermophilusDEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism

RNA(2020)10.1261/rna.075580.120

N/A

0DataRank · unranked

5 citations

Brian A. Yee, Dione L. Sánchez‐Hevia, José Berenguer, Stefan Aigner, G Yeo +2 more

ADAR2 deaminase activity promotes Th17 effector function and protects against intestine inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.22.308221

N/A

0DataRank · unranked

2 citations

Yajing Hao, Benjamin S. Cho, Nicholas Chen, Anna Zheng, Shuyang Zhang +9 more

DDX5 targets tissue-specific RNAs to promote intestine tumorigenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.006668

N/A

0DataRank · unranked

1 citations

Tianyun Long, Yuxin Li, Evelyn Ma, Brian A. Yee, Parth Patel +7 more

Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer

Molecular Cell(2021)10.1016/j.molcel.2021.06.014

N/A

0DataRank · unranked

183 citations

Mark Perelis, Isaac A. Chaim, Jitendra K. Meena, Julia K. Nussbacher, Alexandra Tankka +9 more

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

STAR Protocols(2021)10.1016/j.xpro.2021.100762

N/A

0DataRank · unranked

1 citations

Ryan A. Flynn, Steven M. Blue, Brian A. Yee, Howard Y. Chang, G Yeo +1 more

Splicing Factor SRSF1 Deficiency in the Liver Triggers NASH-like Pathology via R-Loop Induced DNA Damage and Cell Death

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.10.451875

N/A

0DataRank · unranked

0 citations

Bhoomika Mathur, Michael F. Saikali, Ullas V. Chembazhi, Steven M. Blue, Brian A. Yee +9 more

Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq

Nature Protocols(2022)10.1038/s41596-022-00680-z

N/A

0DataRank · unranked

90 citations

Brian A. Yee, Gabriel A. Pratt, Jasmine R. Mueller, Samuel S. Park, Alexander A. Shishkin +4 more

Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP

Nature Methods(2022)10.1038/s41592-022-01708-8

N/A

0DataRank · unranked

24 citations

Hsuan-Lin Her, Kylie A. Shen, Katie Rothamel, Kasey R. Hutt, Allan C. Nojadera +6 more

Crosstalk between CRISPR-Cas9 and the human transcriptome

Nature Communications(2022)10.1038/s41467-022-28719-5

N/A

0DataRank · unranked

10 citations

Assael A. Madrigal, Brian A. Yee, Kevin Dong, Jasmine R. Mueller, G Yeo +1 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.21.481223

N/A

0DataRank · unranked

4 citations

Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer, Jonathan C. Schmok +22 more

Brian A. Yee

Indexed papers

Top data-sharing exemplar

Papers