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fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

STAR Protocols(2021)10.1016/j.xpro.2021.100762Source: DataRank Database

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins is a research paper published in STAR Protocols (2021). On theSindex it has a DataRank of 0. It has been cited 1 time.

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0DataRank · unranked

Scored on demand from live citation data

Open Access1 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (13 grants)Impact (FWCI 0.07)OA: goldTopics (55)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (6)

Ryan A. Flynn ORCID,Steven M. Blue ORCID,Brian A. Yee ORCID,Howard Y. Chang ORCID,G Yeo

Live enrichment

PubMed:34485935 OpenAlex:https://openalex.org/W3195607621

National Institutes of Health

Grant: R01-HD085902

National Institutes of Health

Grant: R01-HG004361 R35-CA209919

National Institutes of Health

Grant: R01-HG004659

National Institutes of Health

Grant: R01-HL137219

National Institutes of Health

Grant: R01-HL137223

National Institutes of Health

Grant: U41-HG009889

National Institutes of Health

Grant: 5R01HD085902-05

Reconstruction of cardiovascular regulatory networks from large-scale single-cell analyses of cardiovascular lineages

National Institutes of Health

Grant: 5R35CA209919-02

LncRNA mechanisms in cancer

National Institutes of Health

Grant: 5U41HG009889-04

A Comprehensive Functional Map of Human Protein-RNA Interactions

National Institutes of Health

Grant: 1R01HL137223-01A1

Analysis of RNA binding proteins directing hematopoietic stem cell fate

National Institutes of Health

Grant: 5R01HG004659-08

Functional RNA elements in the human genome

National Institutes of Health

Grant: 5R01HL137219-02

Dissecting splicing factor mutations in iPSCs

National Institutes of Health

Grant: 1R01HG004361-01

Structural Motifs in RNA

FWCI

0.07

Citation Percentile

0.4%

Citation Trend

2023

goldLicense: cc-by-nc-nd

journalhttps://www.sciencedirect.com/science/article/pii/S2666166721004688/pdf

publisherhttps://www.sciencedirect.com/science/article/pii/S2666166721004688/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2666166721004688?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666166721004688?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.xpro.2021.100762

Fields of Study

RNA modifications and cancerRNA and protein synthesis mechanismsRNA Research and Splicing0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

AcylationCross-Linking ReagentsHumansHydrogen BondingProteinsRNAUltraviolet RaysBlotting, WesternMolecular ProbesMolecular Probe TechniquesGene LibraryPolymerase Chain ReactionComputational BiologyK562 CellsImmunoprecipitation

Keywords

FootprintingRNAPrimer extensionImmunoprecipitationChemistryComputational biologyHydrogen bondBiophysicsBiologyMoleculeBiochemistryBase sequenceDNAGeneScience (General)Ultraviolet RaysAcylationBlotting, WesternMolecular Probe TechniquesPolymerase Chain ReactionQ1-390ProtocolHumansMolecular BiologyAntibodyGene LibraryProteinsHydrogen BondingGenomicsRNAseqCross-Linking ReagentsMolecular ProbesK562 Cells