Job Dekker

Also affiliated with University of Massachusetts Chan Medical School

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

27.2Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 64 papers — median percentile 97. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Ultrastructural Details of Mammalian Chromosome Architecture

Molecular Cell(2020)10.1016/j.molcel.2020.03.003

N/A

8.7DataRank · unranked

667 citations

Sameer Abraham, Sergey V. Venev, Nezar Abdennur, Johan H. Gibcus, Tsung-Han S. Hsieh +7 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Systematic evaluation of chromosome conformation capture assays

Nature Methods(2021)10.1038/s41592-021-01248-7

N/A

4.8DataRank · unranked

274 citations

Liyan Yang, Sameer Abraham, Sergey V. Venev, Nils Krietenstein, Krishna Mohan Parsi +11 more

Perspectives on ENCODE

Nature(2020)10.1038/s41586-020-2449-8

N/A

4.7DataRank · unranked

227 citations

Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken +95 more

My5C: web tools for chromosome conformation capture studies

Nature Methods(2009)10.1038/nmeth1009-690

N/A

3.8DataRank · unranked

97 citations

Nynke L. van Berkum, Amartya Sanyal, Job Dekker, Bryan R. Lajoie

Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML

JCI Insight(2020)10.1172/jci.insight.142149

N/A

2.3DataRank · unranked

90 citations

Anne-Laure Valton, Rebecca A. Gorelov, Mounica Vallurupalli, John M. Krill-Burger, Amie L. Holmes +18 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

Systematic evaluation of chromosome conformation capture assays

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.26.424448

N/A

1.3DataRank · unranked

24 citations

Liyan Yang, Sameer Abraham, Sergey V. Venev, Nils Krietenstein, Krishna Mohan Parsi +11 more

The accessible chromatin landscape of the human genome

Nature(2012)10.1038/nature11232

N/A

1.2DataRank · unranked

2882 citations

Eric Rynes, Richard Humbert, Jost Vielmetter, Matthew T. Maurano, Eric Haugen +57 more

The long-range interaction landscape of gene promoters

Nature(2012)10.1038/nature11279

N/A

1.1DataRank · unranked

1541 citations

Bryan R. Lajoie, Gaurav Jain, Job Dekker, Amartya Sanyal

Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements

Genome Research(2006)10.1101/gr.5571506

N/A

1.1DataRank · unranked

1231 citations

Michael Singer, Ramy A. Arnaout, Rebecca R. Selzer, William L. Lee, Tracey A. Honan +10 more

Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae : An Improved Platform for Comparative Genomics

Genome Biology and Evolution(2022)10.1093/gbe/evac042

Top 19%

1.1DataRank

Top 19%46 citations

Nicolas D. Moya, Robyn E. Tanny, Sophia B Gibson, Alan Tracey, Huimin Na +6 more

Gene Regulation in the Third Dimension

Science(2008)10.1126/science.1152850

N/A

0.840DataRank · unranked

270 citations

Job Dekker

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

Genome Research(2015)10.1101/gr.184986.114

N/A

0.776DataRank · unranked

176 citations

Vlad C. Seitan, Andre J. Faure, Paul Flicek, Thomas Carroll, Job Dekker +4 more

Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00892-7

N/A

0.741DataRank · unranked

139 citations

Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A. Mirny +2 more

Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene

Nucleic Acids Research(2010)10.1093/nar/gkq175

N/A

0.700DataRank · unranked

105 citations

Emily M. Smith, Tomoko M. Tabuchi, Christoph M. Koch, Ian Dunham, John A. Stamatoyannopoulos +2 more

The little skate genome and the evolutionary emergence of wing-like fins

Nature(2023)10.1038/s41586-023-05868-1

N/A

0.659DataRank · unranked

80 citations

Elisa de la Calle‐Mustienes, Rafael D. Acemel, Christina Paliou, Silvia Naranjo, Pedro Manuel Martínez‐García +26 more

Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture

Nature Communications(2021)10.1038/s41467-021-26574-4

N/A

0.584DataRank · unranked

48 citations

Özgün Uyan, Kai Yan, Tianxin Liu, Qian Zhu, Zuzana Tóthová +6 more

Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling

Scientific Reports(2022)10.1038/s41598-022-08602-5

N/A

0.533DataRank · unranked

34 citations

Rosela Golloshi, Priyojit Das, Yang Xu, Peyton H. Terry, Darrian G. Nash +3 more

Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus

eLife(2023)10.7554/elife.84360

N/A

0.512DataRank · unranked

21 citations

Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joël Ryan, Job Dekker +2 more

mRNA initiation and termination are spatially coordinated

Science(2025)10.1126/science.ado8279

N/A

0.406DataRank · unranked

14 citations

Christine L. Carroll, Gyeungyun Kim, Valeria C. Sanabria, Sergey V. Venev, Steven T. Mick +6 more

The little skate genome and the evolutionary emergence of wing-like fin appendages

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.21.485123

N/A

0.330DataRank · unranked

8 citations

Elisa de la Calle‐Mustienes, Rafael D. Acemel, Tetsuya Nakamura, Christina Paliou, Silvia Naranjo +26 more

Revisiting chromatin packaging in mouse sperm

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.26.521943

N/A

0.241DataRank · unranked

4 citations

Chih-Hsiang Yang, Olga Strelkova, Jingyi Wu, Yu Sun, Sneha Gopalan +7 more

Mitotic chromosomes harbor cell type and species-specific structural features within a universal looping architecture

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.08.570796

N/A

0.241DataRank · unranked

4 citations

A. Nicole Fox, Inma González, Amandine Molliex, Thaleia Papadopoulou, Pablo Navarro +2 more

Mitotic chromosomes harbor cell type– and species-specific structural features within a universal loop array conformation

Genome Research(2025)10.1101/gr.280648.125

N/A

0.233DataRank · unranked

3 citations

A. Nicole Fox, Inma González, Amandine Molliex, Thaleia Papadopoulou, Pablo Navarro +2 more

Dynamic changes in chromosome and nuclear architecture during maturation of normal and ALS C9orf72 motor neurons

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.22.677835

N/A

0.104DataRank · unranked

1 citations

Snehal Sambare, Marlies E. Oomen, Nicholas Wightman, Allana Schooley, Joseph R. Klim +8 more

SisterC: A novel 3C-technique to detect chromatin interactions between and along sister chromatids

(2020)10.21203/rs.3.pex-1021/v1

N/A

0DataRank · unranked

0 citations

Adam K. Hedger, Jonathan K. Watts, Job Dekker, Marlies E. Oomen

Cohesin-mediated loop anchors confine the locations of human replication origins

Nature(2022)10.1038/s41586-022-04803-0

N/A

0DataRank · unranked

131 citations

Peiyao A Zhao, Ashley L. Cook, R. Jordan Barnett, Kyle N. Klein, Dalila Saulebekova +20 more

CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity

Nature Cell Biology(2022)10.1038/s41556-022-00992-y

N/A

0DataRank · unranked

68 citations

Job Dekker, Yu Liu

Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome length and individualization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.20.423657

N/A

0DataRank · unranked

2 citations

Bastiaan Dekker, Erin Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki +1 more

Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.15.511838

N/A

0DataRank · unranked

9 citations

Kirill Polovnikov, Bastiaan Dekker, Yu Liu, Denis L. J. Lafontaine, A. Nicole Fox +5 more

Mechanisms of insertions at a DNA double-strand break

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.30.509517

N/A

0DataRank · unranked

0 citations

Junfei Zhao, Jennifer Zagelbaum, Sho Takahashi, Portia Cummings, Allana Schooley +5 more

Mitotic chromosomes scale to nucleo-cytoplasmic ratio and cell size in Xenopus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.20.513104

N/A

0DataRank · unranked

0 citations

Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joël Ryan, Job Dekker +2 more

Multi-contact 3C data reveal that the human genome is largely unentangled

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.03.975425

N/A

0DataRank · unranked

4 citations

Davood Norouzi, Bastiaan Dekker, Yu Liu, Job Dekker, Filipe Tavares-Cadete

Spatial organization of transcribed eukaryotic genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.106591

N/A

0DataRank · unranked

23 citations

Johannes Ribisel, Simon Ullrich, Yana Feodorova, Erica M. Hildebrand, Sebastian Bultmann +8 more

Mechanisms of insertions at a DNA double-strand break

Molecular Cell(2023)10.1016/j.molcel.2023.06.016

N/A

0DataRank · unranked

24 citations

Junfei Zhao, Jennifer Zagelbaum, Jina Lee, Sho Takahashi, Portia Cummings +6 more

Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma

Cell Reports(2023)10.1016/j.celrep.2023.113132

N/A

0DataRank · unranked

22 citations

Elnaz Saberi-Ansari, Nicolas Servant, Ariane Jolly, Pierre de la Grange, Fariba Némati +35 more

Capturing Chromosome Conformation Across Length Scales

Journal of Visualized Experiments(2023)10.3791/64001

N/A

0DataRank · unranked

1 citations

Betül Akgöl Oksuz, Job Dekker, Johan H. Gibcus, Liyan Yang

Capturing Chromosome Conformation Across Length Scales

Journal of Visualized Experiments(2023)10.3791/64001-v

N/A

0DataRank · unranked

1 citations

Betül Akgöl Oksuz, Job Dekker, Johan H. Gibcus, Liyan Yang

Revisiting chromatin packaging in mouse sperm

Genome Research(2023)10.1101/gr.277845.123

N/A

0DataRank · unranked

34 citations

Chih-Hsiang Yang, Olga Strelkova, Jingyi Wu, Yu Sun, Sneha Gopalan +7 more

Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.13.544859

N/A

0DataRank · unranked

1 citations

Kristina Shqillo, Ankita Nand, Ye Zhan, Job Dekker, Anthony N. Imbalzano +1 more

Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis

(2023)10.7554/elife.88599.1

N/A

0DataRank · unranked

1 citations

Kristina Shqillo, Ankita Nand, Ye Zhan, Job Dekker, Anthony N. Imbalzano +1 more

Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis

(2023)10.7554/elife.88599

N/A

0DataRank · unranked

0 citations

Kristina Shqillo, Ankita Nand, Ye Zhan, Job Dekker, Anthony N. Imbalzano +1 more

Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns

Nature Genetics(2024)10.1038/s41588-024-01665-2

N/A

0DataRank · unranked

56 citations

Jake June-Koo Lee, D. Gulhan, Giorgio Melloni, Sergey V. Venev, Rayna Y. Magesh +8 more

Mitotic chromosomes are self-entangled and disentangle through a topoisomerase-II-dependent two-stage exit from mitosis

Molecular Cell(2024)10.1016/j.molcel.2024.02.025

N/A

0DataRank · unranked

51 citations

Kirill Polovnikov, Bastiaan Dekker, Yu Liu, Denis L. J. Lafontaine, A. Nicole Fox +5 more

Rules of engagement for condensins and cohesins guide mitotic chromosome formation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.18.590027

N/A

0DataRank · unranked

22 citations

Johan H. Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J. Beckett +12 more

mRNA initiation and termination are spatially coordinated

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574404

N/A

0DataRank · unranked

9 citations

Christine L. Carroll, Sergey V. Venev, Gyeungyun Kim, Steven T. Mick, Job Dekker +3 more

Polymer physics models reveal structural folding features of single-molecule gene chromatin conformations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.16.603769

N/A

0DataRank · unranked

1 citations

Alex Abraham, Andrea Esposito, Liyan Yang, Johan H. Gibcus, Krishna Mohan Parsi +6 more

Rules of engagement for condensins and cohesins guide mitotic chromosome formation

Science(2025)10.1126/science.adq1709

N/A

0DataRank · unranked

54 citations

Johan H. Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J. Beckett +13 more

Histone Acetylation Differentially Modulates CTCF-CTCF Loops and Intra-TAD Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.29.667515

N/A

0DataRank · unranked

2 citations

Y. Fu, Kathleen L Schiela, Madison Dautle, Ryan Williams, Hannah M Wilson +5 more

TOP2B is required for compartment strength changes upon retinoic acid treatment in SH-SY5Y cells

Chromosome Research(2025)10.1007/s10577-025-09764-4

N/A

0DataRank · unranked

0 citations

Ian G. Cowell, Mushtaq M. Khazeem, Snehal Sambare, Özgün Uyan, Job Dekker +2 more

Detecting chromatin interactions between and along sister chromatids with SisterC

Nature Methods(2020)10.1038/s41592-020-0930-9

N/A

0DataRank · unranked

55 citations

Adam K. Hedger, Jonathan K. Watts, Job Dekker, Marlies E. Oomen

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

Nature Genetics(2021)10.1038/s41588-021-00784-4

N/A

0DataRank · unranked

152 citations

Tyler Borrman, Andrew D. Stephens, Denis L. J. Lafontaine, Sergey V. Venev, Zhiping Weng +3 more

Mechanisms and Functions of Chromosome Compartmentalization

Trends in Biochemical Sciences(2020)10.1016/j.tibs.2020.01.002

N/A

0DataRank · unranked

294 citations

Job Dekker, Erica M. Hildebrand

Hi‐C 3.0: Improved Protocol for Genome‐Wide Chromosome Conformation Capture

Current Protocols(2021)10.1002/cpz1.198

N/A

0DataRank · unranked

123 citations

Liyan Yang, Job Dekker, Johan H. Gibcus, Denis L. J. Lafontaine

Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization

eLife(2021)10.7554/elife.68918

N/A

0DataRank · unranked

47 citations

Bastiaan Dekker, Erin Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki +1 more

Biochemically distinct cohesin complexes mediate positioned loops between CTCF sites and dynamic loops within chromatin domains

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.24.457555

N/A

0DataRank · unranked

25 citations

Job Dekker, Yu Liu

Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.05.455340

N/A

0DataRank · unranked

20 citations

Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A. Mirny +2 more

Cohesin-mediated loop anchors confine the location of human replication origins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.05.425437

N/A

0DataRank · unranked

11 citations

Peiyao A Zhao, Kyle N. Klein, Chunmin Ge, Linda Zhou, Takayo Sasaki +7 more

Loops, TADs, Compartments, and Territories are Elastic and Robust to Dramatic Nuclear Volume Swelling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.20.457153

N/A

0DataRank · unranked

2 citations

Rosela Golloshi, Peyton H. Terry, Darrian G. Nash, Yang Xu, Job Dekker +2 more

ARP2/3- and resection-coupled genome reorganization facilitates translocations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465487

N/A

0DataRank · unranked

0 citations

Allana Schooley, Junfei Zhao, Benjamin R. Schrank, Elsa Callén, Shan Zha +6 more

Chromosome-level reference genomes for two strains of Caenorhabditis briggsae : an improved platform for comparative genomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.01.470807

Top 100%

0DataRank

Top 100%0 citations

Nicolas D. Moya, Robyn E. Tanny, Sophia B Gibson, Alan Tracey, Huimin Na +7 more

Job Dekker

Indexed papers

Top data-sharing exemplar

Papers