🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alexander R. Pico

Gladstone Institutes

ORCID: 0000-0001-5706-2163
Biochemistry, Genetics and Molecular BiologyDecision Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.1Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information

Bioinformatics(2023)10.1093/bioinformatics/btad080
Top 10%
2.1DataRank
Top 10%95 citations

Karthik Soman, Rabia E Akbas, Xiaoyuan Zhou, Brett Smith, Elaine C. Meng +22 more

Papers

Driven by 25 papers — median percentile 78. Top paper: “The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information”.

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information

Bioinformatics(2023)10.1093/bioinformatics/btad080
Top 10%
2.1DataRank
Top 10%95 citations

Karthik Soman, Rabia E Akbas, Xiaoyuan Zhou, Brett Smith, Elaine C. Meng +22 more

Fibrin drives thromboinflammation and neuropathology in COVID-19

Nature(2024)10.1038/s41586-024-07873-4
N/A
2.0DataRank · unranked
99 citations

Zhaoqi Yan, Mauricio Montaño, Elif G. Sözmen, Karuna Dixit, Rahul K. Suryawanshi +39 more

Current and future directions in network biology

Bioinformatics Advances(2024)10.1093/bioadv/vbae099
N/A
1.6DataRank · unranked
100 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Pathway information extracted from 25 years of pathway figures

Genome biology(2020)10.1186/s13059-020-02181-2
Top 18%
1.1DataRank
Top 18%39 citations

Anders Riutta, Martina Kutmon, Alexander R. Pico, Kristina Hanspers

WikiPathways 2024: next generation pathway database

Nucleic Acids Research(2024)10.1093/nar/gkad960
Top 22%
0.921DataRank
Top 22%462 citations

Hasan Balcı, Kristina Hanspers, Susan L. Coort, Marvin Martens, Denise N Slenter +17 more

Mir-30d Regulates Cardiac Remodeling by Intracellular and Paracrine Signaling

Circulation Research(2020)10.1161/circresaha.120.317244
N/A
0.776DataRank · unranked
175 citations

Ane Salvador, Guoping Li, Nedyalka Valkov, Olivia Ziegler, Ashish Yeri +19 more

Cytoscape Web: bringing network biology to the browser

Nucleic Acids Research(2025)10.1093/nar/gkaf365
N/A
0.689DataRank · unranked
98 citations

Dylan Fong, Chengzhan Gao, Christopher Churas, Rudolf Pillich, Joanna Lenkiewicz +12 more

Using published pathway figures in enrichment analysis and machine learning

BMC Genomics(2023)10.1186/s12864-023-09816-1
Top 38%
0.512DataRank
Top 38%10 citations

Alexander R. Pico, Min‐Gyoung Shin

In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response

Science Advances(2023)10.1126/sciadv.adj4884
N/A
0.330DataRank · unranked
8 citations

Augustinus G. Haribowo, Alan H. Baik, Andrea Fossati, Erica Stevenson, Yiwen R. Chen +11 more

Using Published Pathway Figures in Enrichment Analysis and Machine Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.06.548037
Top 55%
0.302DataRank
Top 55%3 citations

Alexander R. Pico, Min‐Gyoung Shin

Current and future directions in network biology

arXiv (Cornell University)(2023)10.48550/arxiv.2309.08478
N/A
0.208DataRank · unranked
3 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Risk factors for mortality in patients with kidney failure on hemodialysis identified by proteomic analysis of CRIC and PACE studies

Nature Communications(2025)10.1038/s41467-025-66763-z
N/A
0.165DataRank · unranked
2 citations

Mark R. Segal, Tariq Shafi, Alexander R. Pico, Min‐Gyoung Shin, Michela Traglia +26 more

Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation

Nature Immunology(2020)10.1038/s41590-020-0654-0
N/A
0DataRank · unranked
202 citations

Jae Kyu Ryu, Sophia Bardehle, Anke Meyer‐Franke, Kenny Kean‐Hooi Ang, Chris Wilson +25 more

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

arXiv (Cornell University)(2023)10.48550/arxiv.2304.09344
N/A
0DataRank · unranked
0 citations

Colleen H Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric S. Zhou +9 more

WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics

Nucleic Acids Research(2024)10.1093/nar/gkae456
N/A
0DataRank · unranked
382 citations

Yuxing Liao, Zhiao Shi, Qian Zhu, Alexander R. Pico, Bing Zhang +1 more

SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.12.464152
N/A
0DataRank · unranked
31 citations

Elif G. Sözmen, Karuna Dixit, Mauricio Montaño, Yusuke Matsui, Yixin Liu +14 more

Shared Mechanisms Govern HIV Transcriptional Suppression in Circulating CD103 + and Gut CD4 + T Cells

Journal of Virology(2020)10.1128/jvi.01331-20
N/A
0DataRank · unranked
12 citations

Shahzada Khan, Tsui‐Hua Chen, Martin Trapečar, Frank Shao-Ying Wu, Guorui Xie +15 more

Incident heart failure in chronic kidney disease: proteomics informs biology and risk stratification

European Heart Journal(2024)10.1093/eurheartj/ehae288
N/A
0DataRank · unranked
25 citations

Rajat Deo, Yue Ren, J. Wang, Alexander R. Pico, Josyf C. Mychaleckyj +30 more

Machine learning reveals prominent spontaneous behavioral changes and treatment efficacy in humanized and transgenic Alzheimer's disease models

Cell Reports(2024)10.1016/j.celrep.2024.114870
N/A
0DataRank · unranked
21 citations

Kevin Luxem, Kelli Lauderdale, Pranav Nambiar, Patrick Honma, Katie K. Ly +20 more

Molecular Signature of Multisystem Cardiometabolic Stress and Its Association With Prognosis

JAMA Cardiology(2020)10.1001/jamacardio.2020.2686
N/A
0DataRank · unranked
29 citations

Bing Yu, Wenshuang Wang, Xiuyan Zhang, Taryn Alkis, Alexander R. Pico +10 more

Defining blood-induced microglia functions in neurodegeneration through multiomic profiling

Nature Immunology(2023)10.1038/s41590-023-01522-0
N/A
0DataRank · unranked
127 citations

Zhaoqi Yan, Karuna Dixit, Jeffrey R. Johnson, Mehdi Bouhaddou, Anke Meyer‐Franke +16 more

Comprehensive Metabolic Phenotyping Refines Cardiovascular Risk in Young Adults

Circulation(2020)10.1161/circulationaha.120.047689
N/A
0DataRank · unranked
55 citations

Jared P. Reis, Alexander R. Pico, Robert R. Kitchen, João A.C. Lima, Donald M. Lloyd‐Jones +9 more

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513552
N/A
0DataRank · unranked
2 citations

Jake Y. Chen, Christopher Churas, Daniel Tik-Pui Fong, Trey Ideker, SN Liu +6 more

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

Bioinformatics(2023)10.1093/bioinformatics/btad118
N/A
0DataRank · unranked
42 citations

Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, Jisoo Park +6 more

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

Bioinformatics(2023)10.1093/bioinformatics/btad570
N/A
0DataRank · unranked
12 citations

Colleen H Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric S. Zhou +9 more