Xing‐Xing Shen

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.7Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Genomic and ecological factors shaping specialism and generalism across an entire subphylum

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.19.545611

Top 30%

0.672DataRank

Top 30%25 citations

Abigail L. LaBella, Marie‐Claire Harrison, John F. Wolters, Chao Liu, Yonglin Li +27 more

Papers

Driven by 31 papers — median percentile 50. Top paper: “ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference”.

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

PLoS Biology(2020)10.1371/journal.pbio.3001007

N/A

4.6DataRank · unranked

765 citations

Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas, Jacob L. Steenwyk

Rooting the Animal Tree of Life

Molecular Biology and Evolution(2021)10.1093/molbev/msab170

N/A

3.9DataRank · unranked

160 citations

Xing‐Xing Shen, Benjamin Evans, Casey W. Dunn, Antonis Rokas, Yuanning Li

A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

Studies in Mycology(2023)10.3114/sim.2023.105.01

N/A

1.6DataRank · unranked

120 citations

Chris Todd Hittinger, Konstanze Bensch, Dana A. Opulente, Xing‐Xing Shen, Yàn Li +23 more

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

PLoS Biology(2022)10.1371/journal.pbio.3001827

N/A

1.1DataRank · unranked

36 citations

Dayna Goltz, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas +1 more

Genomic and ecological factors shaping specialism and generalism across an entire subphylum

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.19.545611

Top 30%

0.672DataRank

Top 30%25 citations

Abigail L. LaBella, Marie‐Claire Harrison, John F. Wolters, Chao Liu, Yonglin Li +27 more

Repeated horizontal gene transfer of GAL actose metabolism genes violates Dollo’s law of irreversible loss

Genetics(2020)10.1093/genetics/iyaa012

N/A

0.510DataRank · unranked

29 citations

Jacek Kominek, Dana A. Opulente, Xing‐Xing Shen, Abigail L. LaBella, Xiaofan Zhou +6 more

Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes

Nature Aging(2024)10.1038/s43587-024-00641-z

N/A

0.470DataRank · unranked

22 citations

Jiani Chen, Chunlai Cui, Yandong Xu, Jingxiu Xu, Zheyi Shi +15 more

Diverse signatures of convergent evolution in cactus-associated yeasts

PLoS Biology(2024)10.1371/journal.pbio.3002832

Top 42%

0.446DataRank

Top 42%15 citations

Marie‐Claire Harrison, Jacob L. Steenwyk, Dana A. Opulente, Abigail L. LaBella, John F. Wolters +6 more

The Influence of the Number of Tree Searches on Maximum Likelihood Inference in Phylogenomics

Systematic Biology(2024)10.1093/sysbio/syae031

N/A

0.416DataRank · unranked

15 citations

Xiaofan Zhou, Yuanning Li, Chris Todd Hittinger, Ronghui Pan, Jinyan Huang +5 more

Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework

Yeast(2024)10.1002/yea.3981

N/A

0.406DataRank · unranked

14 citations

Dana A. Opulente, John F. Wolters, Xing‐Xing Shen, Xiaofan Zhou, Marizeth Groenewald +4 more

Saccharomycotina yeasts defy long-standing macroecological patterns

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2316031121

N/A

0.396DataRank · unranked

13 citations

Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou +6 more

Genomic factors shaping codon usage across the Saccharomycotina subphylum

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae207

N/A

0.322DataRank · unranked

6 citations

Lauren Dineen, Kaitlin J. Fisher, Dana A. Opulente, Marie‐Claire Harrison, John F. Wolters +7 more

Machine learning illuminates how diet influences the evolution of yeast galactose metabolism

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549758

Top 58%

0.273DataRank

Top 58%5 citations

Emily J. Ubbelohde, Abigail L. LaBella, Dana A. Opulente, John F. Wolters, Xiaofan Zhou +5 more

Diverse signatures of convergent evolution in cacti-associated yeasts

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557833

Top 58%

0.269DataRank

Top 58%5 citations

Marie‐Claire Harrison, Jacob L. Steenwyk, Dana A. Opulente, Abigail L. LaBella, John F. Wolters +6 more

Machine learning identifies novel signatures of antifungal drug resistance in Saccharomycotina yeasts

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.09.653161

N/A

0.241DataRank · unranked

4 citations

David C. Rinker, Abigail L. LaBella, Dana A. Opulente, John F. Wolters, Xiaofan Zhou +5 more

Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species

Molecular Biology and Evolution(2025)10.1093/molbev/msaf285

N/A

0.208DataRank · unranked

3 citations

Jacob L. Steenwyk, David C. Rinker, Dana A. Opulente, Abigail L. LaBella, Marie‐Claire Harrison +8 more

Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon

Molecular Biology and Evolution(2024)10.1093/molbev/msae045

N/A

0DataRank · unranked

5 citations

Kyle T. David, John F. Wolters, Steven D. Karlen, Carla Gonçalves, Dana A. Opulente +7 more

Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.05.597512

N/A

0DataRank · unranked

7 citations

Yonglin Li, Yonglin Li, Hongyue Liu, Jacob L. Steenwyk, Kyle T. David +17 more

Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.22.604484

N/A

0DataRank · unranked

1 citations

Joshua G. Schraiber, Johnathan G. Crandall, Abigail L. LaBella, Dana A. Opulente, Marie‐Claire Harrison +8 more

Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework

KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences)(2024)10.22541/au.172114831.13001516/v1

N/A

0DataRank · unranked

0 citations

Dana A. Opulente, John F. Wolters, Xing‐Xing Shen, Xiaofan Zhou, Marizeth Goenewald +4 more

Genomic factors limiting the diversity of Saccharomycotina plant pathogens

G3 Genes Genomes Genetics(2025)10.1093/g3journal/jkaf184

N/A

0DataRank · unranked

0 citations

Caroline West, Dana A. Opulente, Marie‐Claire Harrison, John F. Wolters, Xing‐Xing Shen +6 more

Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum

Current Biology(2022)10.1016/j.cub.2022.10.025

N/A

0DataRank · unranked

30 citations

Hongyue Liu, Jacob L. Steenwyk, Abigail L. LaBella, Marie‐Claire Harrison, Marizeth Groenewald +6 more

Rooting the animal tree of life

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.27.357798

N/A

0DataRank · unranked

6 citations

Xing‐Xing Shen, Benjamin Evans, Casey W. Dunn, Antonis Rokas, Yuanning Li

How has horizontal gene transfer shaped the evolution of insect genomes?

Environmental Microbiology(2022)10.1111/1462-2920.16311

N/A

0DataRank · unranked

10 citations

Yang Li, Yun Chen, Xue‐Xin Chen, Jianhua Huang, Antonis Rokas +2 more

OrthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.30.466607

N/A

0DataRank · unranked

1 citations

Dayna Goltz, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas +1 more

Repeated horizontal gene transfer of GAL actose metabolism genes violates Dollo’s law of irreversible loss

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.22.216101

N/A

0DataRank · unranked

2 citations

Jacek Kominek, Dana A. Opulente, Xing‐Xing Shen, Abigail L. LaBella, Xiaofan Zhou +6 more

Saccharomycotina yeasts defy longstanding macroecological patterns

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.29.555417

N/A

0DataRank · unranked

2 citations

Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou +6 more

Functional and evolutionary integration of a fungal gene with a bacterial operon

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568075

N/A

0DataRank · unranked

1 citations

Kyle T. David, John F. Wolters, Steven D. Karlen, Carla Gonçalves, Dana A. Opulente +7 more

A taxon-rich and genome-scale phylogeny of Opisthokonta

PLoS Biology(2024)10.1371/journal.pbio.3002794

N/A

0DataRank · unranked

29 citations

Jacob L. Steenwyk, Xiaofan Zhou, Darrin T. Schultz, Kevin M. Kocot, Xing‐Xing Shen +3 more

Machine learning enables identification of an alternative yeast galactose utilization pathway

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2315314121

N/A

0DataRank · unranked

28 citations

Emily J. Ubbelohde, Abigail L. LaBella, Dana A. Opulente, John F. Wolters, Xiaofan Zhou +5 more

PhyKIT: A Multitool for Phylogenomics

Current Protocols(2024)10.1002/cpz1.70016

N/A

0DataRank · unranked

12 citations

Gemma I. Martínez‐Redondo, Thomas J. Buida, Emile Gluck‐Thaler, Xing‐Xing Shen, Toni Gabaldón +3 more

Xing‐Xing Shen

Indexed papers

Top data-sharing exemplar

Papers