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OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

PLoS Biology(2022)10.1371/journal.pbio.3001827Source: DataRank Database

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees is a research paper published in PLoS Biology (2022). On theSindex it has a DataRank of 1.1. It has been cited 36 times, with 20 citing works in its 1-hop citation network.

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1.1DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access36 citations · 20 citing works in its network

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Linked data & code

doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

figshare10.6084/m9.figshare.16875904

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (9 grants)Impact (FWCI 2.59)OA: goldTopics (38)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 52%Citation Network 48%

Base Score Contribution

0.542

From this paper's citation signal

Citation Network Contribution

0.510

From 17 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 20 citers.

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Authors (6)

Dayna Goltz ORCID,Thomas J. Buida ORCID,Yuanning Li ORCID,Xing‐Xing Shen ORCID,Antonis Rokas ORCID

Live enrichment

PubMed:36228036 PMC:PMC9595520 OpenAlex:https://openalex.org/W4305082786

Howard Hughes Medical Institute

Grant: James H. Gilliam Fellowships for Advanced Study program

National Science Foundation

Grant: DEB-2110404

National Institute of Allergy and Infectious Diseases

Grant: R56AI146096

Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases

Grant: R01 AI153356

National Institutes of Health

Grant: 5R01AI153356-04

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relatives

National Science Foundation

Grant: 1442113

DIMENSIONS: Collaborative Research: The Making of Biodiversity Across the Yeast Subphylum

National Institutes of Health

Grant: 1R56AI146096-01A1

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relatives

National Science Foundation

Grant: 2110404

Collaborative Research: RoL: The Evolution of the Genotype-Phenotype Map across Budding Yeasts

Burroughs Wellcome Fund

FWCI

2.59

Citation Percentile

0.9%

Citation Trend

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://doi.org/10.1371/journal.pbio.3001827

publisherhttps://doi.org/10.1371/journal.pbio.3001827

publisherhttps://dx.plos.org/10.1371/journal.pbio.3001827

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36228036

repositoryhttps://doaj.org/article/72dd96c0fcc54a78852ebc3d4a1931bf

Fields of Study

Genomics and Phylogenetic StudiesGenetic diversity and population structureChromosomal and Genetic Variations0301 basic medicine0303 health sciences03 medical and health sciencesPhylogenyPedigreeEvolution, MolecularAlgorithmsTranscription Factors

MeSH Terms

AlgorithmsPedigreePhylogenyTranscription FactorsEvolution, Molecular

Keywords

BiologyGene duplicationPhylogenetic treeGenomeGeneGeneticsPhylogenomicsGene familyPruningComputational biologyPhylogeneticsSegmental duplicationTree (set theory)CladeEvolution, MolecularQH301-705.5Methods and ResourcesBiology (General)PhylogenyAlgorithmsPedigreeTranscription Factors

Sustainable Development Goals

SDG 0: Life in Land