🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jouni Sirén

University of California, Santa Cruz

ORCID: 0000-0001-5828-4139
Computer ScienceBiochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
11.3Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8
Top 4%
5.6DataRank
Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Papers

Driven by 19 papers — median percentile 73. Top paper: “The Human Pangenome Project: a global resource to map genomic diversity”.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8
Top 4%
5.6DataRank
Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y
N/A
2.1DataRank · unranked
114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

Science(2021)10.1126/science.abg8871
N/A
0.909DataRank · unranked
426 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Pangenome Graphs

Annual Review of Genomics and Human Genetics(2020)10.1146/annurev-genom-120219-080406
N/A
0.882DataRank · unranked
356 citations

Adam M. Novak, Jonas A. Sibbesen, Simon Heumos, Ali Ghaffaari, Hickey, Glenn +11 more

Genotyping structural variants in pangenome graphs using the vg toolkit

Genome biology(2020)10.1186/s13059-020-1941-7
N/A
0.877DataRank · unranked
346 citations

David N. Heller, Jean Monlong, Jonas A. Sibbesen, Jouni Sirén, Jordan M. Eizenga +5 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y
N/A
0.710DataRank · unranked
113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

Nature Methods(2023)10.1038/s41592-022-01731-9
N/A
0.666DataRank · unranked
84 citations

Jordan M. Eizenga, Adam M. Novak, Jouni Sirén, Xian Chang, Erik Garrison +2 more

A strategy for building and using a human reference pangenome

F1000Research(2021)10.12688/f1000research.19630.2
N/A
0.533DataRank · unranked
10 citations

Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt +35 more

Personalized pangenome references

Nature Methods(2024)10.1038/s41592-024-02407-2
N/A
0.520DataRank · unranked
31 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412486
N/A
0.515DataRank · unranked
30 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Distance indexing and seed clustering in sequence graphs

Bioinformatics(2020)10.1093/bioinformatics/btaa446
N/A
0.457DataRank · unranked
20 citations

Jordan M. Eizenga, Adam M. Novak, Jouni Sirén, Benedict Paten, Xian Chang

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543
Top 50%
0.352DataRank
Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4
Top 65%
0.208DataRank
Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

GBZ File Format for Pangenome Graphs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.12.499787
N/A
0DataRank · unranked
2 citations

Benedict Paten, Jouni Sirén

GBZ file format for pangenome graphs

Bioinformatics(2022)10.1093/bioinformatics/btac656
N/A
0DataRank · unranked
32 citations

Benedict Paten, Jouni Sirén

Efficiently Merging r-indexes

CINECA IRIS Institutial research information system (University of Pisa)(2021)10.1109/dcc50243.2021.00028
N/A
0DataRank · unranked
1 citations

Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie +2 more

Personalized Pangenome References

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.13.571553
N/A
0DataRank · unranked
4 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437240
N/A
0DataRank · unranked
18 citations

Jordan M. Eizenga, Adam M. Novak, Jouni Sirén, Xian Chang, Erik Garrison +2 more