Soichi Wakatsuki

Also affiliated with SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Stanford University

Materials ScienceBiochemistry, Genetics and Molecular BiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2”.

Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2

Nature Communications(2023)10.1038/s41467-023-37254-w

N/A

0.686DataRank · unranked

96 citations

Suman Pokhrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +28 more

Crystal structure of the 4-hydroxybutyryl-CoA synthetase (ADP-forming) from nitrosopumilus maritimus

Communications Biology(2024)10.1038/s42003-024-06432-x

N/A

0.299DataRank · unranked

5 citations

Bradley B. Tolar, Bilge Tosun, Yasuo Yoshikuni, Christopher Francis, Soichi Wakatsuki +2 more

Structural Insights into the Unique Activation Mechanisms of a Non-classical Calpain and Its Disease-Causing Variants

Cell Reports(2020)10.1016/j.celrep.2019.12.077

N/A

0DataRank · unranked

26 citations

Young Joo Sun, S. Khan, Jing Yang, Jonathan Herrmann, Teja Chemudupati +6 more

Structural adaptation of oxygen tolerance in 4-hydroxybutyrl-CoA dehydratase, a key enzyme of archaeal carbon fixation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.935528

N/A

0DataRank · unranked

12 citations

Bradley B. Tolar, Tzanko Doukov, Aldis H. Petriceks, Akshaye Pal, Yasuo Yoshikuni +8 more

Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2022790118

N/A

0DataRank · unranked

36 citations

Sunhee Hwang, Cornelius Gati, Tsutomu Matsui, Carlos Castillo-Orellana, Andrew G. Raub +11 more

Potent and Selective Covalent Inhibitors of the Papain-like Protease from SARS-CoV-2

Research Square(2021)10.21203/rs.3.rs-906621/v1

N/A

0DataRank · unranked

13 citations

Suman Pohkrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +21 more

Structural Insights into Bifunctional Thaumarchaeal Crotonyl-CoA Hydratase and 3-Hydroxypropionyl-CoA Dehydratase from Nitrosopumilus maritimus

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.22.461329

N/A

0DataRank · unranked

0 citations

Büşra Yüksel, Bradley B. Tolar, Esra Ayan, Sam Deutsch, Yasuo Yoshikuni +4 more

Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro

Nature Communications(2022)10.1038/s41467-022-32922-9

N/A

0DataRank · unranked

35 citations

Érica T. Prates, Michael R. Garvin, Irimpan I. Mathews, B Kirtley Amos, Omar Demerdash +13 more

Stabilization of glucose-6-phosphate dehydrogenase oligomers enhances catalytic activity and stability of clinical variants

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101610

N/A

0DataRank · unranked

28 citations

Irimpan I. Mathews, Naoki Horikoshi, Tsutomu Matsui, Manat Kaur, Soichi Wakatsuki +2 more

Cryo-EM, Protein Engineering, and Simulation Enable the Development of Peptide Therapeutics against Acute Myeloid Leukemia

ACS Central Science(2022)10.1021/acscentsci.1c01090

N/A

0DataRank · unranked

13 citations

Naoki Horikoshi, Shanshan Li, Alexander S. Powers, Mikhail A. Hameedi, Grigore Pintilie +8 more

Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2

Research Square(2022)10.21203/rs.3.rs-906621/v2

N/A

0DataRank · unranked

0 citations

Suman Pokhrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +28 more

Crystal Structure of the 4-Hydroxybutyryl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549078

N/A

0DataRank · unranked

1 citations

Bradley B. Tolar, Bilge Tosun, Yasuo Yoshikuni, Christopher Francis, Soichi Wakatsuki +2 more

Time-resolved cryogenic electron tomography for the study of transient cellular processes

Molecular Biology of the Cell(2024)10.1091/mbc.e24-01-0042

N/A

0DataRank · unranked

12 citations

J. Summers, Kara A. Zielinski, Cali Antolini, Mayura Panjalingam, Stella Lisova +8 more

A hidden cysteine in Fis1 targeted to prevent excessive mitochondrial fission and dysfunction under oxidative stress

Nature Communications(2025)10.1038/s41467-025-59434-6

N/A

0DataRank · unranked

12 citations

Gwangbeom Heo, Irimpan I. Mathews, Shun Yokoi, Tsutomu Matsui, Ayori Mitsutake +3 more

Combining MicroED and native mass spectrometry for structural discovery of enzyme–small molecule complexes

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2503780122

N/A

0DataRank · unranked

4 citations

Cameron W. Flowers, Mengting Liu, Matthew P. Agdanowski, Samuel Johnson, J. Summers +16 more

Crystal Structure of 3-Hydroxypropionyl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.22.677778

N/A

0DataRank · unranked

0 citations

Bilge Tosun, Merve Yilmaz, Bradley B. Tolar, Yasuo Yoshikuni, Christopher Francis +5 more

Exosomes From Induced Pluripotent Stem Cell–Derived Cardiomyocytes Promote Autophagy for Myocardial Repair

Journal of the American Heart Association(2020)10.1161/jaha.119.014345

N/A

0DataRank · unranked

118 citations

Gentaro Ikeda, Yuko Tada, Ji‐Hye Jung, Evgeniya Vaskova, Raymond G. Sierra +9 more

A Novel Unorthodox Dimeric Primary Enoyl-CoA Reductase Structure

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.17.683039

N/A

0DataRank · unranked

0 citations

Irimpan I. Mathews, Yasuo Yoshikuni, Soichi Wakatsuki, Hasan DeMi̇rci̇, Cahine Kulakman

The Nucleoid-Associated Protein GapR Uses Conserved Structural Elements To Oligomerize and Bind DNA

mBio(2020)10.1128/mbio.00448-20

N/A

0DataRank · unranked

12 citations

Saumya Saurabh, Jonathan Herrmann, Soichi Wakatsuki, Lucy Shapiro, Rogério F. Lourenço