🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Efthymia Papalexi

Presage Biosciences (United States)

ORCID: 0000-0001-5898-694X

Also affiliated with Pulse Biosciences (United States), New York Genome Center, New York University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile
0.335Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Tahoe-100M : A Giga-Scale Single-Cell Perturbation Atlas for Context-Dependent Gene Function and Cellular Modeling

10.1101/2025.02.20.639398
Top 29%
0.698DataRank
Top 29%104 citations

Airol A Ubas, Richard de Borja, Valentine Svensson, Nicole Thomas, Neha Thakar +27 more

Papers

Driven by 15 papers — median percentile 48. Top paper: “Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens”.

Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens

Nature Genetics(2021)10.1038/s41588-021-00778-2
N/A
5.7DataRank · unranked
256 citations

Eleni P. Mimitou, Andrew Butler, Samantha D. Foster, Bernadette Bracken, William M. Mauck +6 more

Comprehensive Integration of Single-Cell Data

Cell(2019)10.1016/j.cell.2019.05.031
N/A
1.5DataRank · unranked
16515 citations

Andrew Butler, Pejman Mohammadi, Christoph Hafemeister, Efthymia Papalexi, William M. Mauck +5 more

Integrated analysis of multimodal single-cell data

Cell(2021)10.1016/j.cell.2021.04.048
N/A
1.4DataRank · unranked
15542 citations

Stephanie Hao, Erica Andersen-Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler +23 more

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Nature Biotechnology(2018)10.1038/nbt.4096
N/A
1.4DataRank · unranked
14465 citations

Pejman Mohammadi, Peter Smibert, Efthymia Papalexi, Rahul Satija, Andrew Butler

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

Nature Biotechnology(2021)10.1038/s41587-021-00927-2
N/A
0.944DataRank · unranked
541 citations

Caleb A. Lareau, Kelvin Y. Chen, Andre L. Zorzetto-Fernandes, Yuhan Hao, Yusuke Takeshima +16 more

Integrated analysis of multimodal single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.12.335331
N/A
0.928DataRank · unranked
486 citations

Stephanie Hao, Erica Andersen‐Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler +20 more

Tahoe-100M : A Giga-Scale Single-Cell Perturbation Atlas for Context-Dependent Gene Function and Cellular Modeling

10.1101/2025.02.20.639398
Top 29%
0.698DataRank
Top 29%104 citations

Airol A Ubas, Richard de Borja, Valentine Svensson, Nicole Thomas, Neha Thakar +27 more

Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq

Nature Methods(2022)10.1038/s41592-022-01705-x
N/A
0.657DataRank · unranked
79 citations

Alejandro Méndez‐Mancilla, Yuhan Hao, Efthymia Papalexi, William M. Mauck, Lu Lu +6 more

Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.576933
N/A
0.470DataRank · unranked
22 citations

Rahul Satija, Efthymia Papalexi, Isabella Mascio, Hans‐Hermann Wessels, Huiyoung Yun +5 more

A single-cell cytokine dictionary of human peripheral blood

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.12.693897
Top 52%
0.335DataRank
Top 52%8 citations

Sören Becker, Larsen Vornholz, Efthymia Papalexi, Joey Pangallo, Amir Ali Moinfar +25 more

Generating a 10 million cell atlas of immune responses to cytokine stimulation using high throughput single cell RNA sequencing 3845

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1599
N/A
0DataRank · unranked
0 citations

Joey Pangallo, Simone Marrujo, Bryan Hariadi, Crina Curca, Alexa Suyama +17 more

A single-cell cytokine dictionary of human peripheral blood

Research Square(2025)10.21203/rs.3.rs-8337240/v1
Top 100%
0DataRank
Top 100%0 citations

Lukas Oesinghaus, Sören Becker, Larsen Vornholz, Efthymia Papalexi, Joey Pangallo +23 more

Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens

Nature Cell Biology(2025)10.1038/s41556-025-01622-z
N/A
0DataRank · unranked
29 citations

Carol Dalgarno, Efthymia Papalexi, Isabella Mascio, Hans‐Hermann Wessels, Huiyoung Yun +5 more

Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478894
N/A
0DataRank · unranked
11 citations

Alejandro Méndez‐Mancilla, Efthymia Papalexi, William M. Mauck, Lu Lu, John Morris +5 more

Characterizing the molecular regulation of inhibitory immune checkpoints with multi-modal single-cell screens

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.28.175596
N/A
0DataRank · unranked
39 citations

Eleni P. Mimitou, Andrew Butler, Samantha D. Foster, Bernadette Bracken, William M. Mauck +5 more