🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Amanda M. Larracuente

University of Rochester

ORCID: 0000-0001-5944-5686
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.1Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing

Genome Biology and Evolution(2021)10.1093/gbe/evab138
Top 8%
2.6DataRank
Top 8%123 citations

John S. Sproul, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M. Larracuente, Steffen U. Pauls +3 more

Papers

Driven by 33 papers — median percentile 82. Top paper: “Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing”.

Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing

Genome Biology and Evolution(2021)10.1093/gbe/evab138
Top 8%
2.6DataRank
Top 8%123 citations

John S. Sproul, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M. Larracuente, Steffen U. Pauls +3 more

Evolution of genome structure in the Drosophila simulans species complex

Genome Research(2021)10.1101/gr.263442.120
Top 9%
2.3DataRank
Top 9%117 citations

Ching-Ho Chang, Danielle E. Khost, Jeffrey Vedanayagam, Jeffrey R. Adrion, Yi Liao +5 more

Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade

Molecular Biology and Evolution(2020)10.1093/molbev/msaa078
N/A
1.7DataRank · unranked
67 citations

Danielle E. Khost, Danna G. Eickbush, Sherif Negm, Xiaolu Wei, Isaac Wong +2 more

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

eLife(2022)10.7554/elife.75795
N/A
1.3DataRank · unranked
44 citations

Lauren E Gregory, Kathleen E Gordon, Colin D. Meiklejohn, Amanda M. Larracuente, Ching-Ho Chang

Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges

Genome Research(2023)10.1101/gr.277387.122
N/A
1.2DataRank · unranked
66 citations

Scott Hotaling, Jacqueline Heckenhauer, Ashlyn Powell, Dez Marshall, Amanda M. Larracuente +4 more

Long-reads are revolutionizing 20 years of insect genome sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.14.431146
Top 27%
0.738DataRank
Top 27%18 citations

John S. Sproul, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M. Larracuente, Steffen U. Pauls +3 more

Evolution of genome structure in the Drosophila simulans species complex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.27.968743
Top 42%
0.455DataRank
Top 42%11 citations

Ching-Ho Chang, Danielle E. Khost, Jeffrey Vedanayagam, Jeffrey R. Adrion, Yi Liao +5 more

Transcription of a centromere-enriched retroelement and local retention of its RNA are significant features of the CENP-A chromatin landscape

Genome biology(2024)10.1186/s13059-024-03433-1
N/A
0.405DataRank · unranked
10 citations

Rong Sun, A. Amjad, Savannah J. Hoyt, L. Ouyang, Cécile Courret +7 more

Meeting report: transposable elements at the crossroads of evolution, health and disease 2023

Mobile DNA(2023)10.1186/s13100-023-00307-4
N/A
0.174DataRank · unranked
2 citations

Kathleen H. Burns, Katherine B. Chiappinelli, Edward B. Chuong, Clément Goubert, Alba Guarné +4 more

Epistatic selection on a selfish Segregation Distorter supergene: drive, recombination, and genetic load

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.22.473781
N/A
0DataRank · unranked
0 citations

Ching-Ho Chang, Cara L. Brand, Christina A. Muirhead, Daven C. Presgraves, Amanda M. Larracuente +1 more

Genome size evolution in the diverse insect order Trichoptera

GigaScience(2022)10.1093/gigascience/giac011
N/A
0DataRank · unranked
68 citations

Paul B. Frandsen, John S. Sproul, Zheng Li, Juraj Paule, Amanda M. Larracuente +6 more

The nanoCUT&RUN technique visualizes telomeric chromatin in Drosophila

PLoS Genetics(2022)10.1371/journal.pgen.1010351
N/A
0DataRank · unranked
6 citations

Xiaolu Wei, Cécile Courret, Min Cui, Lin Cheng, Jing Wu +4 more

600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.02.494618
N/A
0DataRank · unranked
9 citations

Scott Hotaling, Jacqueline Heckenhauer, Ashlyn Powell, Dez Marshall, Amanda M. Larracuente +4 more

The nanoCUT&RUN technique visualizes telomeric chromatin in Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.20.488892
N/A
0DataRank · unranked
1 citations

Xiaolu Wei, Cécile Courret, Min Cui, Lin Cheng, Jing Wu +4 more

The evolutionary history of Drosophila simulans Y chromosomes reveals molecular signatures of resistance to sex ratio meiotic drive

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.22.521550
N/A
0DataRank · unranked
0 citations

David Ogereau, Clément Gilbert, Amanda M. Larracuente, Catherine Montchamp‐Moreau, Cécile Courret

New perspectives on the causes and consequences of male meiotic drive

Current Opinion in Genetics & Development(2023)10.1016/j.gde.2023.102111
N/A
0DataRank · unranked
16 citations

Xiaolu Wei, Amanda M. Larracuente, Cécile Courret

The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive

Molecular Biology and Evolution(2023)10.1093/molbev/msad152
N/A
0DataRank · unranked
11 citations

David Ogereau, Clément Gilbert, Amanda M. Larracuente, Catherine Montchamp‐Moreau, Cécile Courret

Genetic conflict and the origin of multigene families: implications for sex chromosome evolution

Proceedings of the Royal Society B Biological Sciences(2023)10.1098/rspb.2023.1823
N/A
0DataRank · unranked
11 citations

Amanda M. Larracuente, Emiliano Martí

Turnover of retroelements and satellite DNA drives centromere reorganization over short evolutionary timescales in Drosophila

PLoS Biology(2024)10.1371/journal.pbio.3002911
N/A
0DataRank · unranked
17 citations

Lucas Hemmer, Xiaolu Wei, Prachi Patel, Bryce J. Chabot, Nicholas J. Fuda +5 more

Transcription of a centromere-enriched retroelement and local retention of its RNA are significant features of the CENP-A chromatin landscape

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.14.574223
N/A
0DataRank · unranked
2 citations

Ranran Sun, A Amjad, Savannah J. Hoyt, L Ouyang, Cécile Courret +7 more

Consequences of drive on the evolution of genomes and species

G3 Genes Genomes Genetics(2025)10.1093/g3journal/jkaf076
N/A
0DataRank · unranked
1 citations

Amanda M. Larracuente, Logan T. Edvalson

Pervasive suppressors halt the spread of selfish Segregation Distorter in a natural population

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.681989
N/A
0DataRank · unranked
2 citations

Tyler Handler, Nick Fuda, Danielle Pascua, Taylar Mouton, Amanda M. Larracuente +1 more

An innovation in host responses to escalating genomic conflicts

Trends in Genetics(2025)10.1016/j.tig.2025.03.001
N/A
0DataRank · unranked
0 citations

Amanda M. Larracuente, Emiliano Martí

Resistance to natural and synthetic gene drive systems

Journal of Evolutionary Biology(2020)10.1111/jeb.13693
N/A
0DataRank · unranked
90 citations

Nikolai Windbichler, Robert L. Unckless, Andreas Sutter, Jan‐Niklas Runge, Perran A. Ross +16 more

Seeing the Forest Despite the Trees in Repeat‐Rich Genomic Regions

Molecular Ecology Resources(2025)10.1111/1755-0998.70008
N/A
0DataRank · unranked
0 citations

John S. Sproul, Amanda M. Larracuente

RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles

Molecular Ecology Resources(2020)10.1111/1755-0998.13305
N/A
0DataRank · unranked
44 citations

Anya Greenberg, Amanda M. Larracuente, John S. Sproul, Sherif Negm

RepeatProfiler: a pipeline for visualization and comparative analysis of repetitive DNA profiles

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.111252
N/A
0DataRank · unranked
3 citations

Alan E. Greenberg, Amanda M. Larracuente, John S. Sproul, Sherif Negm

Heterochromatin-dependent transcription of satellite DNAs in the Drosophila melanogaster female germline

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.268920
N/A
0DataRank · unranked
3 citations

Danna G. Eickbush, Iain Speece, Amanda M. Larracuente, Xiaolu Wei

Heterochromatin-dependent transcription of satellite DNAs in the Drosophila melanogaster female germline

eLife(2021)10.7554/elife.62375
N/A
0DataRank · unranked
47 citations

Danna G. Eickbush, Iain Speece, Amanda M. Larracuente, Xiaolu Wei

Distinct spermiogenic phenotypes underlie sperm elimination in the Segregation Distorter meiotic drive system

PLoS Genetics(2021)10.1371/journal.pgen.1009662
N/A
0DataRank · unranked
30 citations

Xiaolu Wei, Ching-Ho Chang, Amanda M. Larracuente, Benjamin Loppin, Raphaëlle Dubruille +1 more

Genome size evolution in the diverse insect order Trichoptera

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.10.443368
N/A
0DataRank · unranked
7 citations

Paul B. Frandsen, John S. Sproul, Zheng Li, Juraj Paule, Amanda M. Larracuente +6 more

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

Insecta mundi(2021)10.1101/2021.08.16.456461
N/A
0DataRank · unranked
2 citations

Lauren E Gregory, Kathleen E Gordon, Colin D. Meiklejohn, Amanda M. Larracuente, Ching-Ho Chang

Distinct spermiogenic phenotypes underlie sperm elimination in the Segregation Distorter meiotic drive system

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425928
N/A
0DataRank · unranked
0 citations

Xiaolu Wei, Ching-Ho Chang, Amanda M. Larracuente, Benjamin Loppin, Raphaëlle Dubruille +1 more