Yoshiki Vázquez‐Baeza

ORCID: 0000-0001-6014-2009

Also affiliated with Briteseed (United States), Jacobs (United States)

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment”.

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

Microbiome(2021)10.1186/s40168-021-01083-0

N/A

2.5DataRank · unranked

64 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

mSystems(2020)10.1128/msystems.00292-20

N/A

2.1DataRank · unranked

87 citations

Karla Vasco, Yoshiki Vázquez‐Baeza, Lingjing Jiang, James T. Morton, Danxun Li +10 more

Qiita: rapid, web-enabled microbiome meta-analysis

Nature Methods(2018)10.1038/s41592-018-0141-9

N/A

0.982DataRank · unranked

697 citations

Jose A. Navas-Molina, Tomasz Kosciolek, Daniel McDonald, Yoshiki Vázquez-Baeza, Gail Ackermann +24 more

Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course

Cell(2022)10.1016/j.cell.2022.08.021

N/A

0.862DataRank · unranked

313 citations

Ryan Baumann, Xiaohui Gao, Myra Mendoza, Sneha Singh, Ilana Katz Sand +38 more

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

mSystems(2020)10.1128/msystems.00630-19

N/A

0.764DataRank · unranked

162 citations

Niina Haiminen, Anna Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida +11 more

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438427

N/A

0.752DataRank · unranked

20 citations

Shi Huang, Antonio G. González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22

N/A

0.727DataRank · unranked

126 citations

Shi Huang, Antonio González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Nature Chemical Biology(2020)10.1038/s41589-020-00677-3

N/A

0.710DataRank · unranked

113 citations

Yoshiki Vázquez‐Baeza, Julia M. Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito +15 more

Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies

Cell Reports Methods(2023)10.1016/j.crmeth.2022.100391

N/A

0.672DataRank · unranked

87 citations

Brandilyn A. Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C. Sollecito, Yoshiki Vázquez‐Baeza +10 more

Links between gut microbiome composition and fatty liver disease in a large population sample

Gut Microbes(2021)10.1080/19490976.2021.1888673

N/A

0.646DataRank · unranked

73 citations

Fredrik Åberg, Ville Männistö, Aki S. Havulinna, Guillaume Méric, Yang Liu +12 more

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

Genome Research(2021)10.1101/gr.275777.121

N/A

0.574DataRank · unranked

45 citations

Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri +18 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases

Genes(2023)10.3390/genes14061239

N/A

0.470DataRank · unranked

22 citations

Daniel McDonald, Antonio González, Yoshiki Vázquez‐Baeza, Lingjing Jiang, Climent Casals‐Pascual +6 more

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077636

N/A

0.434DataRank · unranked

17 citations

Yoshiki Vázquez‐Baeza, Julia M. Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito +14 more

Scalable power analysis and effect size exploration of microbiome community differences with Evident

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.19.492684

N/A

0.330DataRank · unranked

8 citations

Daniel McDonald, Antonio González, Yoshiki Vázquez‐Baeza, Lingjing Jiang, Climent Casals‐Pascual +6 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009056

N/A

0DataRank · unranked

6 citations

Evan Bolyen, A. K. Adamov, Aeriel D. Belk, Emily M. Borsom, Zachary M. Burcham +26 more

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Microbiome(2021)10.1186/s40168-021-01102-0

N/A

0DataRank · unranked

63 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +10 more

Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish

Research Square(2021)10.21203/rs.3.rs-106737/v1

N/A

0DataRank · unranked

0 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +9 more

Challenges in benchmarking metagenomic profilers

Nature Methods(2021)10.1038/s41592-021-01141-3

N/A

0DataRank · unranked

157 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Challenges in Benchmarking Metagenomic Profilers

Research Square(2020)10.21203/rs.3.rs-109702/v1

N/A

0DataRank · unranked

0 citations

Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen +6 more

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

mSystems(2022)10.1128/msystems.00050-22

N/A

0DataRank · unranked

25 citations

Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez‐Baeza, Liat Shenhav +7 more

Challenges in Benchmarking Metagenomic Profilers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.382994

N/A

0DataRank · unranked

4 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Links between gut microbiome composition and fatty liver disease in a large population sample

medRxiv(2020)10.1101/2020.07.30.20164962

N/A

0DataRank · unranked

10 citations

Fredrik Åberg, Ville Männistö, Aki S. Havulinna, Guillaume Méric, Yang Liu +12 more

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

medRxiv(2020)10.1101/2020.11.19.20234229

N/A

0DataRank · unranked

16 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk

Brain Behavior and Immunity(2020)10.1016/j.bbi.2020.10.003

N/A

0DataRank · unranked

81 citations

Tomasz Kościółek, Rebecca E. Daly, Yoshiki Vázquez‐Baeza, Austin D. Swafford, Rob Knight +2 more