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Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22Source: DataRank Database

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy is a research paper published in mSystems (2022). On theSindex it has a DataRank of 0. It has been cited 126 times.

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Enrichment:Funding (25 grants)OA: goldTopics (45)IDs (PubMed)

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Authors (26)

Shi Huang ORCID,Antonio González ORCID,Imran McGrath ORCID,Daniel McDonald ORCID,Niina Haiminen ORCID

Live enrichment

PubMed:35369727

Academy of Finland

Grant: 321351

Interrelations of Gut Microbiome, Plasma Metabolome, and Genome in the Pathophysiology of Hypertension / Consortium: HyperOme

Academy of Finland

Grant: 295741

Ecological modeling of the human gut microbiome: individuality, dynamics, and function in large population cohorts

Alfred P. Sloan Foundation

Grant: G-2017-9838

Crohn's and Colitis Foundation

Grant: 675191

DOD | Defense Advanced Research Projects Agency

Grant: JUMP/CRISP

HHS | National Institutes of Health

Grant: P30DK120515 DP1AT010885 U19AG063744 U24CA248454

HHS | National Institutes of Health

Grant: F30CA243480

HHS | National Institutes of Health

Grant: K12GM068524

International Business Machines Corporation

Grant: A1770534

National Science Foundation

Grant: RAPID 2038509

National Science Foundation

Grant: BIO150043

National Institutes of Health

Grant: 1DP1AT010885-01

Mapping host-microbe-metabolite interactions in 3D to find diet-derived enhancers of immunity

National Institutes of Health

Grant: 5P30DK120515-04

San Diego Digestive Diseases Research Center

National Institutes of Health

Grant: 5U24CA248454-04

Advanced Development of Informatics Technologies for Cancer Research and Management (U24 Clinical Trial Optional)

National Science Foundation

Grant: 2038509

RAPID: Improving QIIME 2 and UniFrac for Viruses to Respond to COVID-19

National Institutes of Health

Grant: 5K12GM068524-09

San Diego IRACDA: Professors for the Future

National Institutes of Health

Grant: 5U19AG063744-02

Alzheimer's Gut Microbiome Project

National Institutes of Health

Grant: 5F30CA243480-02

Comprehensive characterization of the cancer microbiome and its immuno-oncology interface

British Heart Foundation

Grant: RG/18/13/33946

British Heart Foundation

Grant: RG/13/13/30194

NCCIH NIH HHS

Grant: DP1 AT010885

British Heart Foundation

Grant: CH/12/2/29428

NCI NIH HHS

Grant: U24 CA248454

NIA NIH HHS

Grant: U19 AG063744

NIDDK NIH HHS

Grant: P30 DK120515

goldLicense: cc-by

publisherhttps://doi.org/10.1128/msystems.00167-22

publisherhttps://journals.asm.org/doi/pdf/10.1128/msystems.00167-22

repositoryhttps://doaj.org/article/74b34747bb7a480dbd6966ee04b18e87

repositoryhttps://escholarship.org/uc/item/1fk6f4wr

repositoryhttp://hdl.handle.net/10138/343683

Fields of Study

0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciencesHumansPhylogenyMetagenomeRNA, Ribosomal, 16SMicrobiotaEcology

MeSH Terms

HumansPhylogenyMetagenomeRNA, Ribosomal, 16SMicrobiotaEcology

Keywords

57016Soperational genomic unitBioinformatics and Computational Biologyta3111Microbiologysupervised learningreference phylogenyRNA, Ribosomal, 16SGeneticsUniFracHumansLife Below Watertaxonomy independentPhylogenyRibosomalta113metagenomicsEcologyMicrobiotaHuman GenomeBiological SciencesQR1-502004FOS: Biological sciencesRNAMetagenomeMicrobiomeResearch Article