Saurabh Sinha

Also affiliated with The Wallace H. Coulter Department of Biomedical Engineering

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 39 papers. Top paper: “The genome of a songbird”.

The genome of a songbird

Nature(2010)10.1038/nature08819

N/A

10.5DataRank · unranked

836 citations

David F. Clayton, Hans Ellegren, Arthur P. Arnold, LaDeana W. Hillier, Axel Künstner +77 more

Core and region-enriched networks of behaviorally regulated genes and the singing genome

Science(2014)10.1126/science.1256780

N/A

2.7DataRank · unranked

127 citations

Andreas R. Pfenning, Jason T. Howard, Charles A Blatti, Fang Liu, James M. Ward +11 more

A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains

Microbiology Spectrum(2023)10.1128/spectrum.02536-23

N/A

0.551DataRank · unranked

13 citations

Shounak Bhogale, Ping-Hung Hsieh, Payam Dibaeinia, Ananthan Nambiar, Sergei Maslov +3 more

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007607

N/A

0DataRank · unranked

54 citations

Ameya Bhope, Jing Shan Lim, Saurabh Sinha, Amin Emad, Edward W Huang

Global shape of Toll activation is determined by wntD enhancer properties

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1918268117

N/A

0DataRank · unranked

3 citations

Shari Carmon, Inna Averbukh, Farzaneh Khajouei, Saurabh Sinha, Eyal D. Schejter +3 more

Model-based analysis of polymorphisms in an enhancer reveals cis-regulatory mechanisms

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.07.939264

N/A

0DataRank · unranked

2 citations

Núria Samper, NJ Djabrayan, Bryan Lunt, Gerardo Jiménez, Saurabh Sinha +1 more

Mechanistic analysis of enhancer sequences in the Estrogen Receptor transcriptional program

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.08.373555

N/A

0DataRank · unranked

2 citations

You Jin Song, Bryan Lunt, Kannanganattu V. Prasanth, Saurabh Sinha, Shayan Tabe-Bordbar

VarSAn: Associating pathways with a set of genomic variants using network analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.22.424077

N/A

0DataRank · unranked

1 citations

Matthew C. Kendzior, Xiyu Ge, Liudmila S. Mainzer, Saurabh Sinha, Xiaoman Xie

GENVISAGE: Rapid Identification of Discriminative and Explainable Feature Pairs for Genomic Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.935411

N/A

0DataRank · unranked

0 citations

Charles Blatti, Saurabh Sinha, Aditya Parameswaran, Silu Huang

Uncovering Effective Explanations for Interactive Genomic Data Analysis

Patterns(2020)10.1016/j.patter.2020.100093

N/A

0DataRank · unranked

0 citations

Charles Blatti, Saurabh Sinha, Aditya Parameswaran, Silu Huang

An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes

Genome biology(2021)10.1186/s13059-020-02213-x

N/A

0DataRank · unranked

23 citations

Casey Hanson, Remington E. Schmidt, Kelly J. Bouchonville, Steven M. Offer, Saurabh Sinha +1 more

Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study

npj Systems Biology and Applications(2021)10.1038/s41540-021-00169-7

N/A

0DataRank · unranked

15 citations

Saurabh Sinha, Amin Emad

Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks

Nucleic Acids Research(2021)10.1093/nar/gkab765

N/A

0DataRank · unranked

10 citations

Saurabh Sinha, Payam Dibaeinia

VarSAn: associating pathways with a set of genomic variants using network analysis

Nucleic Acids Research(2021)10.1093/nar/gkab624

N/A

0DataRank · unranked

2 citations

Matthew C. Kendzior, Xiyu Ge, Liudmila S. Mainzer, Saurabh Sinha, Xiaoman Xie

Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.01.433444

N/A

0DataRank · unranked

1 citations

Saurabh Sinha, Payam Dibaeinia

Influenza causes alterations to oligodendrocyte-specific transcripts and the myelin lipidome in the adult mouse central nervous system.

Research Square(2021)10.21203/rs.3.rs-310861/v1

N/A

0DataRank · unranked

0 citations

Justin Kim, Katiria Soto‐Díaz, Payam Dibaeinia, Hisami Koito, Saurabh Sinha +4 more

The Liver X Receptor Is Selectively Modulated to Differentially Alter Female Mammary Metastasis-associated Myeloid Cells

Endocrinology(2022)10.1210/endocr/bqac072

N/A

0DataRank · unranked

21 citations

Hashni Epa Vidana Gamage, Srishti Tiwari, Chaeyeon Han, Madeline Henn, Natalia Krawczyńska +10 more

Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding

iScience(2022)10.1016/j.isci.2022.104152

N/A

0DataRank · unranked

5 citations

Saurabh Sinha, Shounak Bhogale

Monoallelically-expressed Noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.04.498693

N/A

0DataRank · unranked

1 citations

Minxue Liu, Swapna Vidhur Daulatabad, Saba Gaffari, Rajneesh Srivastava, You Jin Song +18 more

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.519089

N/A

0DataRank · unranked

0 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retention

BMC Genomics(2023)10.1186/s12864-023-09498-9

N/A

0DataRank · unranked

9 citations

Saurabh Sinha, Shayan Tabe-Bordbar

Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse

Journal of Neuroinflammation(2023)10.1186/s12974-023-02862-2

N/A

0DataRank · unranked

9 citations

Justin Kim, Jenny Drnevich, Payam Dibaeinia, Hisami Koito, Saurabh Sinha +6 more

BEDwARS: a robust Bayesian approach to bulk gene expression deconvolution with noisy reference signatures

Genome biology(2023)10.1186/s13059-023-03007-7

N/A

0DataRank · unranked

5 citations

Kelly J. Bouchonville, Ehsan Saleh, Remington E. Schmidt, Steven M. Offer, Saurabh Sinha +1 more

Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT)

Research Square(2023)10.21203/rs.3.rs-2481749/v1

N/A

0DataRank · unranked

7 citations

Alex W. Schrader, Ali Ebrahimpour Boroojeny, Marisa Asadian, Juyeon Lee, You Jin Song +4 more

SEAMoD: A fully interpretable neural network for cis-regulatory analysis of differentially expressed genes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.565900

N/A

0DataRank · unranked

2 citations

Christopher H. Seward, Lisa Stubbs, Saurabh Sinha, Shounak Bhogale

CIMLA: Interpretable AI for inference of differential causal networks

arXiv (Cornell University)(2023)10.48550/arxiv.2304.12523

N/A

0DataRank · unranked

0 citations

Saurabh Sinha, Payam Dibaeinia

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

Research Square(2023)10.21203/rs.3.rs-3037310/v1

N/A

0DataRank · unranked

0 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

SPREd: A simulation-supervised neural network tool for gene regulatory network reconstruction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.566399

N/A

0DataRank · unranked

0 citations

Saurabh Sinha, Zijun Wu

Intracellular spatial transcriptomic analysis toolkit (InSTAnT)

Nature Communications(2024)10.1038/s41467-024-49457-w

N/A

0DataRank · unranked

16 citations

Alex W. Schrader, Bhavay Aggarwal, Ali Ebrahimpour Boroojeny, Marisa Asadian, Juyeon Lee +5 more

SPREd: a simulation-supervised neural network tool for gene regulatory network reconstruction

Bioinformatics Advances(2024)10.1093/bioadv/vbae011

N/A

0DataRank · unranked

8 citations

Saurabh Sinha, Zijun Wu

Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression

eLife(2024)10.7554/elife.80684

N/A

0DataRank · unranked

5 citations

Minxue Liu, Swapna Vidhur Daulatabad, Saba Gaffari, You Jin Song, Rajneesh Srivastava +18 more

Mechanistic analysis of enhancer sequences in the estrogen receptor transcriptional program

Communications Biology(2024)10.1038/s42003-024-06400-5

N/A

0DataRank · unranked

3 citations

You Jin Song, Bryan Lunt, Zahra Alavi, Kannanganattu V. Prasanth, Saurabh Sinha +1 more

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

Human Molecular Genetics(2024)10.1093/hmg/ddae109

N/A

0DataRank · unranked

1 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

SpaceExpress enables differential spatial transcriptomics with natural coordinate systems

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.19.628720

N/A

0DataRank · unranked

1 citations

Abhishek Ojha, Alex W. Schrader, Juyeon Lee, Zijun Wu, Ian M. Traniello +6 more

On-chip 3D potency assay for prediction of clinical outcomes for cell therapy candidates for osteoarthritis

Nature Communications(2025)10.1038/s41467-025-60158-w

N/A

0DataRank · unranked

11 citations

Elisa B Nieves, Bhavay Aggarwal, Annie C. Bowles, Hazel Y. Stevens, Linda Kippner +8 more

CellSP enables module discovery and visualization for subcellular spatial transcriptomics data

Communications Biology(2025)10.1038/s42003-025-08891-2

N/A

0DataRank · unranked

1 citations

Saurabh Sinha, Bhavay Aggarwal

Multi-omics integration at cell type resolution uncovers gene-metabolite mechanisms underlying osteoarthritis heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.26.678886

N/A

0DataRank · unranked

0 citations

Paramita Chatterjee, Linda Kippner, Hazel Y. Stevens, Scott D. Boden, Hicham Drissi +5 more

SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks

Cell Systems(2020)10.1016/j.cels.2020.08.003

N/A

0DataRank · unranked

133 citations

Saurabh Sinha, Payam Dibaeinia

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

PLoS Biology(2020)10.1371/journal.pbio.3000583

N/A

0DataRank · unranked

51 citations

Amin Emad, Matthew J. Berry, Lisa Gatzke, Milt Epstein, Daniel Lanier +23 more