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Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks

Nucleic Acids Research(2021)10.1093/nar/gkab765Source: DataRank Database

Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks is a research paper published in Nucleic Acids Research (2021). On theSindex it has a DataRank of 0. It has been cited 10 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access10 citations

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Linked data & code

Convolutional Neural Network-based Sequence-to-Expression Prediction Tool (CoNSEPT) · University of Illinois Urbana-Champaign

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)Impact (FWCI 0.63)OA: goldTopics (24)Linked Datasets (1)DataCite Reuse (1)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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Authors (2)

Saurabh Sinha ORCID,Payam Dibaeinia ORCID

Live enrichment

PubMed:34508359 PMC:PMC8501998 OpenAlex:https://openalex.org/W3196944487

NIH

Grant: R01GM114341

NIH

Grant: R35GM131819

DOE

Grant: DE-SC0018420

FWCI

0.63

Citation Percentile

0.7%

Citation Trend

2021

2022

2023

2024

2025

goldLicense: https://creativecommons.org/licenses/by-nc/4.0/

journalhttps://academic.oup.com/nar/article-pdf/49/18/10309/40538210/gkab765.pdf

publisherhttps://academic.oup.com/nar/article-pdf/49/18/10309/40538210/gkab765.pdf

publisherhttp://academic.oup.com/nar/article-pdf/49/18/10309/40538210/gkab765.pdf

journalhttps://doi.org/10.1093/nar/gkab765

repositoryhttps://pubmed.ncbi.nlm.nih.gov/34508359

Fields of Study

Genomics and Chromatin DynamicsRNA Research and SplicingPlant Molecular Biology Research

MeSH Terms

AnimalsDrosophilaEnhancer Elements, GeneticNeural Networks, ComputerComputational Biology

Keywords

EnhancerBiologyCooperativityComputational biologyMechanism (biology)Function (biology)Set (abstract data type)Sequence (biology)Convolutional neural networkInferenceComputer scienceArtificial intelligenceGeneticsTranscription factorPhysicsGene

Sustainable Development Goals

SDG 0: Peace, Justice and strong institutions

Convolutional Neural Network-based Sequence-to-Expression Prediction Tool (CoNSEPT)

10.13012/b2idb-8692568_v1University of Illinois Urbana-Champaign