Gregory E. Crawford

Also affiliated with Duke Medical Center, Duke University Hospital, Applied Genetic Technologies (United States)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

22.4Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 57 papers — median percentile 82. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

Nucleic Acids Research(2014)10.1093/nar/gku810

N/A

3.4DataRank · unranked

77 citations

Christopher L. Frank, Gregory E. Crawford, Uwe Ohler, Galip Gürkan Yardımcı

Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns

Nature Communications(2019)10.1038/s41467-019-10461-0

N/A

2.8DataRank · unranked

151 citations

Gökçen Eraslan, Christian M. Page, Jari Lahti, Marius Lahti-Pulkkinen, Esa Hämäläinen +233 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

Nature Genetics(2007)10.1038/ng1966

N/A

1.2DataRank · unranked

3453 citations

Rhona K Stuart, Gary Hon, Yutao Fu, Christina W Ching, R. David Hawkins +10 more

The accessible chromatin landscape of the human genome

Nature(2012)10.1038/nature11232

N/A

1.2DataRank · unranked

2882 citations

Eric Rynes, Richard Humbert, Jost Vielmetter, Matthew T. Maurano, Eric Haugen +57 more

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nature(2009)10.1038/nature07829

N/A

1.2DataRank · unranked

2569 citations

Gary C. Hon, R. David Hawkins, Yanxiao Zhang, Alexander Stark, Lindsey F. Harp +18 more

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

Science(2024)10.1126/science.adh1938

Top 18%

1.2DataRank

Top 18%69 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +90 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

DNase I sensitivity QTLs are a major determinant of human expression variation

Nature(2012)10.1038/nature10808

N/A

0.984DataRank · unranked

704 citations

Athma A. Pai, Roger Pique-Regi, Jean-Baptiste Veyrieras, Daniel J. Gaffney, Joseph K. Pickrell +10 more

DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells

Cold Spring Harbor Protocols(2010)10.1101/pdb.prot5384

N/A

0.975DataRank · unranked

662 citations

Gregory E. Crawford, Lingyun Song

The PsychENCODE project

Nature Neuroscience(2015)10.1038/nn.4156

N/A

0.927DataRank · unranked

483 citations

Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Philip L. De Jager, Gregory E. Crawford +87 more

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

Genome Research(2010)10.1101/gr.112656.110

N/A

0.872DataRank · unranked

333 citations

Lingyun Song, Bum-Kyu Lee, Darin London, Damian Keefe, Kerstin Lindblad‐Toh +4 more

Targeted long-read sequencing identifies missing disease-causing variation

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.06.006

N/A

0.825DataRank · unranked

243 citations

Arvis Sulovari, Tianyun Wang, Hailey Loucks, Kendra Hoekzema, Katherine M. Munson +45 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders

Science Translational Medicine(2024)10.1126/scitranslmed.adh9974

Top 27%

0.733DataRank

Top 27%22 citations

Cuihua Xia, Yi Jiang, Yu Chen, Jiaqi Zhou, Rujia Dai +95 more

Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration

Development(2020)10.1242/dev.191262

N/A

0.641DataRank · unranked

71 citations

Jianhong Ou, Nutishia Lee, Kwangdeok Shin, Valentina Cigliola, Lingyun Song +4 more

Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness

Science(2025)10.1126/science.adl1988

N/A

0.533DataRank · unranked

21 citations

Lexi R. Bounds, Carson Key Taylor, Alan L Su, Anthony Rizzo, Alejandro Barrera +12 more

Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF‐PU.1‐DPP4 Axis

Advanced Science(2021)10.1002/advs.202004673

N/A

0.533DataRank · unranked

34 citations

Ergang Wang, Jorge Prado Balcazar, Zhenhua Wu, Kun Xiang, Yi Wang +22 more

Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids

Scientific Reports(2024)10.1038/s41598-024-54302-7

N/A

0.457DataRank · unranked

20 citations

Yifan Wang, Feinan Wu, Scott Norton, Jessica Mariani, Fumitaka Inoue +5 more

Cell-type specific effects of genetic variation on chromatin accessibility during human neuronal differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.904862

N/A

0.442DataRank · unranked

18 citations

Angela L. Elwell, Nil Aygün, Michael J. Lafferty, Oleh Krupa, Kerry E. Cheek +10 more

Sex dependent glial-specific changes in the chromatin accessibility landscape in late-onset Alzheimer’s disease brains

Molecular Neurodegeneration(2021)10.1186/s13024-021-00481-0

N/A

0.406DataRank · unranked

14 citations

Lingyun Song, Julia Gamache, Melanie E. Garrett, Alexias Safi, Young Won Yun +11 more

Differential contribution of cis -regulatory elements to higher order chromatin structure and expression of the CFTR locus

UNC Libraries(2020)10.17615/dthw-cs04

N/A

0.312DataRank · unranked

7 citations

Gregory E. Crawford, Lidija K. Gorsic, Alexias Safi, Ann Harris, Daniel Neems +5 more

Characterization and bioinformatic filtering of ambient gRNAs in single-cell CRISPR screens using CLEANSER

Cell Genomics(2025)10.1016/j.xgen.2025.100766

N/A

0.292DataRank · unranked

6 citations

Marisa C. Hamilton, Thomas Cowart, Alejandro Barrera, Lexi R. Bounds, Alexander C. Nelson +8 more

Comparative mapping of single-cell transcriptomic landscapes in neurodegenerative diseases

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.13.628436

N/A

0.266DataRank · unranked

4 citations

Zhaohui Man, Daniel Oliveros Gingerich, Julia Gamache, Melanie E. Garrett, Geidy E. Serrano +5 more

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

Genome Research(2022)10.1101/gr.272203.120

N/A

0.208DataRank · unranked

3 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Characterization and bioinformatic filtering of ambient gRNAs in single-cell CRISPR screens using CLEANSER

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.04.611293

N/A

0.165DataRank · unranked

2 citations

Marisa C. Hamilton, Thomas Cowart, Alejandro Barrera, Lexi R. Bounds, Alexander C. Nelson +6 more

Quantitative occupancy of myriad transcription factors from one DNase experiment enables efficient comparisons across conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.28.171587

N/A

0.165DataRank · unranked

2 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Enhancer-driven gene regulatory network of forebrain human development provides insights into autism

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.06.555206

N/A

0.104DataRank · unranked

1 citations

Jessica Mariani, Abhiram Natu, Feinan Wu, Boxun Li, Davide Capauto +21 more

Cell modeling and rescue of a novel noncoding genetic cause of glycogen storage disease IX

Genetics in Medicine Open(2025)10.1016/j.gimo.2025.103474

N/A

0DataRank · unranked

0 citations

Xue Zou, Jian Dai, R. A. Francis, Alexias Safi, Karynne Patterson +14 more

Functional Annotation of the Major Histocompatibility Complex Locus

bioRxiv (Cold Spring Harbor Laboratory)(2026)10.64898/2026.02.01.703124

N/A

0DataRank · unranked

0 citations

Alejandro Barrera, Maria ter Weele, Siyan Liu, Euphy Wu, Shengyu Li +22 more

Epstein-Barr virus promotes survival through germinal center light zone chromatin architecture

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.22.350108

N/A

0DataRank · unranked

2 citations

Emma Heckenberg, Lingyun Song, Gregory E. Crawford, Micah A. Luftig, Joanne Dai

Genome-wide identification of regulatory elements in Sertoli cells

UNC Libraries(2020)10.17615/jvzj-6h82

N/A

0DataRank · unranked

0 citations

Yoichiro Shibata, Danielle M. Maatouk, Uwe Ohler, Gregory E. Crawford, Blanche Capel +2 more

Modular Utilization of Distal cis-Regulatory Elements Controls Ifng Gene Expression in T Cells Activated by Distinct Stimuli

UNC Libraries(2020)10.17615/5hec-qv31

N/A

0DataRank · unranked

0 citations

Casey T. Weaver, Albert S. Baldwin, Yoichiro Shibata, Anand Balasubramani, Gregory E. Crawford +1 more

Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation

UNC Libraries(2020)10.17615/2crw-5z58

N/A

0DataRank · unranked

0 citations

Gregory E. Crawford, Wei Sun, Piotr A. Mieczkowski, Lucy H. Williams, Joshua Starmer +5 more

Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association

UNC Libraries(2020)10.17615/cpdz-m712

N/A

0DataRank · unranked

0 citations

Vishwanath R. Iyer, Fengtang Yang, Jason D. Lieb, Yunyun Ni, Gregory E. Crawford +8 more

Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma Genomes

UNC Libraries(2020)10.17615/c0g0-wj38

N/A

0DataRank · unranked

0 citations

Umesh Bhanot, Stephen C.J. Parker, Lingyun Song, Nancy F. Hansen, Terrence S. Furey +14 more

Chromatin Accessibility Mapping Identifies Mediators of Basal Transcription and Retinoid-Induced Repression of OTX2 in Medulloblastoma

UNC Libraries(2020)10.17615/bjzb-p239

N/A

0DataRank · unranked

0 citations

Hai Yan, Gregory E. Crawford, Lingyun Song, Monica Zhang, Vishwanath R. Iyer +5 more

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

UNC Libraries(2020)10.17615/gz9e-z407

N/A

0DataRank · unranked

0 citations

James M. Davison, Colin R. Lickwar, Ghislaı̀n Breton, Lingyun Song, John F. Rawls +1 more

A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

UNC Libraries(2020)10.17615/pm5s-m572

N/A

0DataRank · unranked

0 citations

Terrence S. Furey, Ann Harris, Calvin U. Cotton, Lingyun Song, Shih‐Hsing Leir +5 more

Genome-wide annotation of gene regulatory elements linked to cell fitness

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.434470

N/A

0DataRank · unranked

14 citations

Tyler S. Klann, Alejandro Barrera, Adarsh R. Ettyreddy, Siyan Liu, Ryan Rickels +10 more

Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.23.457406

N/A

0DataRank · unranked

1 citations

Yu Xia, Joseph B. Balowski, Jianhong Ou, Lingyun Song, Alexias Safi +5 more

Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration

Development(2022)10.1242/dev.200133

N/A

0DataRank · unranked

40 citations

Yu Xia, Joseph Balowski, Jianhong Ou, Lingyun Song, Alexias Safi +5 more

Chromatin Remodeling in Patient-Derived Colorectal Cancer Models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.24.501300

N/A

0DataRank · unranked

1 citations

Ergang Wang, Gabrielle Rupprecht, John B. Mantyh, Marcos Negrete, Golshid Sanati +20 more

Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains

Cell & Bioscience(2023)10.1186/s13578-023-01120-5

N/A

0DataRank · unranked

23 citations

Daniel Gingerich, E. Keats Shwab, Julio Barrera, Melanie E. Garrett, Cordelia Hume +4 more

Epstein-Barr virus induces germinal center light zone chromatin architecture and promotes survival through enhancer looping at the BCL2A1 locus

mBio(2023)10.1128/mbio.02444-23

N/A

0DataRank · unranked

6 citations

Elliott D. SoRelle, Emma Heckenberg, Lingyun Song, Jana M. Cable, Gregory E. Crawford +2 more

Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.12.540037

N/A

0DataRank · unranked

0 citations

Daniel Gingerich, E. Keats Shwab, Julio Barrera, Melanie E. Garrett, Cordelia Hume +4 more

Chromatin Remodeling in Patient‐Derived Colorectal Cancer Models

Advanced Science(2024)10.1002/advs.202303379

N/A

0DataRank · unranked

14 citations

Ergang Wang, John B. Mantyh, Gabrielle Rupprecht, Marcos Negrete, Golshid Sanati +24 more

Promoter Deletion Leading to Allele Specific Expression in a Genetically Unsolved Case of Primary Ciliary Dyskinesia

American Journal of Medical Genetics Part A(2024)10.1002/ajmg.a.63880

N/A

0DataRank · unranked

1 citations

Weining Yin, Amanda Smith, Patrick R. Sears, Margaret W. Leigh, Thomas W. Ferkol +20 more

Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.10.574997

N/A

0DataRank · unranked

6 citations

Lexi R. Bounds, Carson Key Taylor, Alan L Su, Anthony Rizzo, Alejandro Barrera +4 more

Machine learning methods for predicting guide RNA effects in CRISPR epigenome editing experiments

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.18.590188

N/A

0DataRank · unranked

5 citations

Tianyou Luo, Alejandro Barrera, Lexi R. Bounds, Tyler S. Klann, Maria ter Weele +7 more

Global landscape and genetic regulation of RNA editing in cortical samples from individuals with schizophrenia

UNC Libraries(2024)10.17615/w913-sr13

N/A

0DataRank · unranked

0 citations

Jianwei Wang, A Charney, Vahram Haroutunian, Nancy Francoeur, Gil S.E +60 more

Cross-tissue molecular responses in the liver and blood after toxicant exposures

Research Square(2025)10.21203/rs.3.rs-7610132/v1

N/A

0DataRank · unranked

1 citations

Benpeng Miao, Shuhua Fu, Wanqing Shao, Cristian Coarfa, Ravindra Kumar1 +26 more

Cell Modeling and Rescue of a Novel Non-coding Genetic Cause of Glycogen Storage Disease IX

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.14.654043

N/A

0DataRank · unranked

0 citations

Xue Zou, Jian Dai, R. A. Francis, Alexias Safi, Karynne Patterson +13 more

Toxicogenomic Insights into Environmental Toxicant Exposures: The TaRGET II Resource

Research Square(2025)10.21203/rs.3.rs-7285514/v1

N/A

0DataRank · unranked

0 citations

Benpeng Miao, Shuhua Fu, Cristian Coarfa, Ravindra Kumar1, Prashant Kumar Kuntala +26 more

Promoter Deletion Leading to Allele Specific Expression in a Genetically Unsolved Case of Primary Ciliary Dyskinesia

UNC Libraries(2025)10.17615/eftt-rm75

N/A

0DataRank · unranked

0 citations

Maimoona A. Zariwala, Kenneth N. Olivier, Amanda Smith, Hong Dang, Weining Yin +20 more

Gregory E. Crawford

Indexed papers

Top data-sharing exemplar

Papers