Pedro Belda‐Ferre

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 40 papers. Top paper: “SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment”.

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

Microbiome(2021)10.1186/s40168-021-01083-0

N/A

2.5DataRank · unranked

64 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

Enhancing untargeted metabolomics using metadata-based source annotation

Nature Biotechnology(2022)10.1038/s41587-022-01368-1

N/A

2.0DataRank · unranked

79 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +68 more

Global chemical effects of the microbiome include new bile-acid conjugations

Nature(2020)10.1038/s41586-020-2047-9

N/A

0.959DataRank · unranked

595 citations

Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy +53 more

Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

Nature(2022)10.1038/s41586-022-05049-6

N/A

0.939DataRank · unranked

523 citations

Joshua I. Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen +95 more

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

mSystems(2020)10.1128/msystems.00630-19

N/A

0.764DataRank · unranked

162 citations

Niina Haiminen, Anna Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida +11 more

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438427

N/A

0.752DataRank · unranked

20 citations

Shi Huang, Antonio G. González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22

N/A

0.727DataRank · unranked

126 citations

Shi Huang, Antonio González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Microbiome(2021)10.1186/s40168-021-01102-0

N/A

0.624DataRank · unranked

63 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +10 more

A Comparison of DNA/RNA Extraction Protocols for High-Throughput Sequencing of Microbial Communities

BioTechniques(2021)10.2144/btn-2020-0153

N/A

0.604DataRank · unranked

55 citations

Clarisse Marotz, Pedro Belda‐Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki +13 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Microbiome(2021)10.1186/s40168-020-00960-4

N/A

0.571DataRank · unranked

44 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

Marine Drugs(2021)10.3390/md19010020

N/A

0.553DataRank · unranked

39 citations

Mingxun Wang, Nathan A. Moss, Ricardo Silva, Jon G. Sanders, Sergey Nurk +16 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Chemical Proportionality within Molecular Networks

Analytical Chemistry(2021)10.1021/acs.analchem.1c01520

N/A

0.546DataRank · unranked

37 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

mSystems(2022)10.1128/msystems.01411-21

N/A

0.528DataRank · unranked

11 citations

Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine +35 more

Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

medRxiv(2022)10.1101/2022.03.09.22272113

N/A

0.515DataRank · unranked

30 citations

Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Pavitra Roychoudhury +24 more

A Synthesis-Based Reverse Metabolomics Approach for the Discovery of Chemical Structures from Humans and Animals.

Research Square(2021)10.21203/rs.3.rs-820302/v1

N/A

0.464DataRank · unranked

21 citations

Emily C. Gentry, Stephanie L. Collins, Morgan Panitchpakdi, Pedro Belda‐Ferre, Allison K. Stewart +14 more

Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution

mSystems(2023)10.1128/msystems.00006-23

N/A

0.442DataRank · unranked

18 citations

Rodolfo A. Salido, Pedro Belda‐Ferre, MacKenzie Bryant, Charles Cowart, Maria D. Tiu +6 more

Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies

mSystems(2024)10.1128/msystems.00985-24

N/A

0.434DataRank · unranked

17 citations

Pedro Belda‐Ferre, Simone Zuffa, Vincent Charron‐Lamoureux, Ipsita Mohanty, Gail Ackermann +13 more

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

medRxiv(2020)10.1101/2020.11.19.20234229

N/A

0.425DataRank · unranked

16 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

Reference data based insights expand understanding of human metabolomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194159

N/A

0.360DataRank · unranked

10 citations

Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio +59 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

medRxiv(2020)10.1101/2020.05.12.20073577

N/A

0.345DataRank · unranked

9 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Pangenome comparison of Bacteroides fragilis genomospecies unveils genetic diversity and ecological insights

mSystems(2024)10.1128/msystems.00516-24

N/A

0.330DataRank · unranked

8 citations

Marvic Carrillo Terrazas, Luke R. Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda‐Ferre +11 more

Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting

Clinical Infectious Diseases(2024)10.1093/cid/ciad738

N/A

0.312DataRank · unranked

7 citations

Shira R. Abeles, Chris Longhurst, Lucy E. Horton, Frank Edward Myers, Lindsay Riggs-Rodriguez +58 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Research Square(2020)10.21203/rs.3.rs-56028/v1

N/A

0.208DataRank · unranked

3 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Research Square(2020)10.21203/rs.3.rs-56028/v2

N/A

0.165DataRank · unranked

2 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes

Microbiology Spectrum(2025)10.1128/spectrum.01912-25

N/A

0.104DataRank · unranked

1 citations

Justin P. Shaffer, Pedro Belda‐Ferre, Ipsita Mohanty, Yuhan Weng, Kalen Cantrell +17 more

Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

Med(2022)10.1016/j.medj.2022.10.002

N/A

0DataRank · unranked

85 citations

Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Hang Dai +25 more

Chemical Proportionality within Molecular Networks

ChemRxiv(2021)10.26434/chemrxiv.14396105

N/A

0DataRank · unranked

0 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings

mSystems(2022)10.1128/msystems.00103-22

N/A

0DataRank · unranked

8 citations

Pedro Belda‐Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan +32 more

Reference data-set driven metabolomics

Research Square(2021)10.21203/rs.3.rs-654519/v1

N/A

0DataRank · unranked

0 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +69 more

Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.478759

N/A

0DataRank · unranked

1 citations

Karenina Sanders, Pedro Belda‐Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin +30 more

Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools

The Lancet Regional Health - Americas(2023)10.1016/j.lana.2023.100449

N/A

0DataRank · unranked

40 citations

Smruthi Karthikeyan, Tommi Gaines, Richard S. Garfein, Rodolfo A. Salido, Victor Cantu +66 more

Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish

Research Square(2021)10.21203/rs.3.rs-106737/v1

N/A

0DataRank · unranked

0 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +9 more

Pangenome comparison of Bacteroides fragilis genomospecies unveil genetic diversity and ecological insights

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572674

N/A

0DataRank · unranked

0 citations

Marvic Carrillo Terrazas, Luke R. Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda‐Ferre +11 more

Chemical Proportionality within Molecular Networks

ChemRxiv(2021)10.26434/chemrxiv.14396105.v1

N/A

0DataRank · unranked

1 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

Emergence of an early SARS-CoV-2 epidemic in the United States

medRxiv(2021)10.1101/2021.02.05.21251235

N/A

0DataRank · unranked

10 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) screening among symptom-free healthcare workers

Infection Control and Hospital Epidemiology(2021)10.1017/ice.2021.81

N/A

0DataRank · unranked

13 citations

Angela K. Ulrich, Talia D. Wiggen, Ali J. Strickland, Brianna M. Naumchik, Shalini Kulasingam +9 more

Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2

ACS Sensors(2021)10.1021/acssensors.1c01088

N/A

0DataRank · unranked

52 citations

Duverney Chaverra‐Rodriguez, Calvin P. Lin, Andrea L. Smidler, Ting Yang, Lenissa Alcantara +8 more

Emergence of an early SARS-CoV-2 epidemic in the United States

Cell(2021)10.1016/j.cell.2021.07.030

N/A

0DataRank · unranked

52 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more