Ya-Ming Hou

Also affiliated with Jefferson Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 39 papers. Top paper: “Loss of N1-methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression”.

Loss of N1-methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression

eLife(2021)10.7554/elife.70619

N/A

0.919DataRank · unranked

41 citations

Jae-Yeon Hwang, Thomas Christian, Sunita Maharjan, Fuad Mohammad, Howard Gamper +3 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3

N/A

0.389DataRank · unranked

11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

A Mitochondrial tRNA Mutation Causes Axonal CMT in a Large Venezuelan Family

Annals of Neurology(2020)10.1002/ana.25854

N/A

0DataRank · unranked

9 citations

Yngo Garcia, Marta Margeta, Sunita Maharjan, Claudia Jürgensen, J.M. Briceño +8 more

tRNAArg-Derived Fragments Can Serve as Arginine Donors for Protein Arginylation

Cell chemical biology(2020)10.1016/j.chembiol.2020.05.013

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0DataRank · unranked

30 citations

Howard Gamper, Christine Polte, Zoya Ignatova, R. Kraetzner, Michael Shtutman +4 more

Purification and Use of tRNA for Enzymatic Post-translational Addition of Amino Acids to Proteins

STAR Protocols(2020)10.1016/j.xpro.2020.100207

N/A

0DataRank · unranked

28 citations

Howard Gamper, Ya-Ming Hou, Anna Kashina, Irem Avcilar-Kücükgöze

A Label-Free Assay for Aminoacylation of tRNA

Genes(2020)10.3390/genes11101173

N/A

0DataRank · unranked

27 citations

Ya-Ming Hou, Howard Gamper

Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation

The Medicine Forum(2020)10.1101/2020.12.29.424751

N/A

0DataRank · unranked

3 citations

A.B. Loveland, E. Svidritskiy, Howard Gamper, Ya-Ming Hou, Andrei A. Korostelev +1 more

Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

Nature Communications(2021)10.1038/s41467-021-27415-0

N/A

0DataRank · unranked

95 citations

A.B. Loveland, Howard Gamper, Ya-Ming Hou, Gabriel Demo, Andrei A. Korostelev +1 more

Insights into genome recoding from the mechanism of a classic +1-frameshifting tRNA

Nature Communications(2021)10.1038/s41467-020-20373-z

N/A

0DataRank · unranked

43 citations

Haixing Li, Isao Masuda, D. Miklos Robkis, Thomas Christian, Adam Conn +5 more

Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation

Nature Communications(2021)10.1038/s41467-021-24911-1

N/A

0DataRank · unranked

31 citations

Howard Gamper, A.B. Loveland, Isao Masuda, Christine E. Carbone, E. Svidritskiy +3 more

Twice exploration of tRNA +1 frameshifting in an elongation cycle of protein synthesis

Nucleic Acids Research(2021)10.1093/nar/gkab734

N/A

0DataRank · unranked

16 citations

Yujia Mao, Isao Masuda, Henri McGuigan, Gregor Blaha, Yuhong Wang +3 more

A stress-free strategy to correct point mutations in patient iPS cells

Stem Cell Research(2021)10.1016/j.scr.2021.102332

N/A

0DataRank · unranked

8 citations

Elizabeth Kropf, Ya-Ming Hou, Lorraine Iacovitti, Jingli Cai

Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct and long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.03.467190

N/A

0DataRank · unranked

10 citations

Mohammad Nabizadehmashhadtoroghi, Amr Makhamreh, Howard Gamper, Caroline A. McCormick, Neda K. Rezapour +4 more

Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.31.446434

N/A

0DataRank · unranked

3 citations

A.B. Loveland, Howard Gamper, Ya-Ming Hou, Gabriel Demo, Andrei A. Korostelev +1 more

Insights into Genome Recoding from the Mechanism of a Classic +1-Frameshifting tRNA

The Medicine Forum(2021)10.1101/2020.12.31.424971

N/A

0DataRank · unranked

1 citations

Haixing Li, Isao Masuda, D. Miklos Robkis, Thomas Christian, Adam Conn +5 more

Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis

Nature Communications(2022)10.1038/s41467-022-28078-1

N/A

0DataRank · unranked

34 citations

Xiaojun Li, Joonyoung Shin, Howard Gamper, Ya-Ming Hou, James C. Sacchettini +2 more

tRNA methylation resolves codon usage bias at the limit of cell viability

Cell Reports(2022)10.1016/j.celrep.2022.111539

N/A

0DataRank · unranked

23 citations

Yuka Yamaki, Rajesh Detroja, Somnath Tagore, Henry Moore, Sunita Maharjan +7 more

Synthesis of Long RNA with a Site-Specific Modification by Enzymatic Splint Ligation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.17.508400

N/A

0DataRank · unranked

5 citations

Caroline A. McCormick, Sepideh Tavakoli, Meni Wanunu, Sara H. Rouhanifard, Ya-Ming Hou +1 more

tRNA Methylation Resolves Codon Usage Bias at the Limit of Cell Viability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.14.491930

N/A

0DataRank · unranked

1 citations

Yuka Yamaki, Rajesh Detroja, Somnath Tagore, Henry Moore, Sunita Maharjan +7 more

Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation

The Medicine Forum(2022)10.1101/2022.12.29.522164

N/A

0DataRank · unranked

1 citations

Soneya Majumdar, Ryan Treen, Manjuli R. Sharma, Jamie Corro, Howard Gamper +8 more

Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing

Nature Communications(2023)10.1038/s41467-023-35858-w

N/A

0DataRank · unranked

131 citations

Mohammad Nabizadeh, Amr Makhamreh, Howard Gamper, Caroline A. McCormick, Neda K. Rezapour +4 more

Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2302006120

N/A

0DataRank · unranked

8 citations

Soneya Majumdar, Ryan Treen, Manjuli R. Sharma, Jamie Corro, Howard Gamper +8 more

Enzymatic synthesis of RNA standards for mapping and quantifying RNA modifications in sequencing analysis

Methods in enzymology on CD-ROM/Methods in enzymology(2023)10.1016/bs.mie.2023.04.024

N/A

0DataRank · unranked

6 citations

Caroline A. McCormick, Amr Makhamreh, Meni Wanunu, Sara H. Rouhanifard, Ya-Ming Hou +1 more

Protocol to identify the core gene supported by an essential gene in E. coli bacteria using a genome-wide suppressor screen

STAR Protocols(2023)10.1016/j.xpro.2023.102196

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0DataRank · unranked

4 citations

Ya-Ming Hou, Isao Masuda

Genome-Wide Profiling of tRNA Using an Unexplored Reverse Transcriptase with High Processivity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.09.569604

N/A

0DataRank · unranked

1 citations

Howard Gamper, Henri McGuigan, Sunita Maharjan, Zhiyi Sun, Keerthana Krishnan +7 more

Post-Transcriptional Methylation of Mitochondrial-tRNA Differentially Contributes to Mitochondrial Pathology

The Medicine Forum(2023)10.1101/2023.12.09.569632

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0DataRank · unranked

1 citations

Howard Gamper, Yuka Yamaki, Robert Y. Henley, Nan‐Sheng Li, Takeo Suzuki +7 more

Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores

ACS Nano(2024)10.1021/acsnano.4c04625

N/A

0DataRank · unranked

19 citations

Kyril Kavetsky, Chih‐Yuan Lin, Sunita Maharjan, Howard Gamper, Nan‐Sheng Li +4 more

Cracking the Code: Enhancing Molecular Tools for Progress in Nanobiotechnology

ACS Applied Bio Materials(2024)10.1021/acsabm.4c00432

N/A

0DataRank · unranked

8 citations

Laura P. Rebolledo, Elizabeth Skelly, Renata de Freitas Saito, Hui Wei, David M.J. Lilley +16 more

Post-transcriptional methylation of mitochondrial-tRNA differentially contributes to mitochondrial pathology

Nature Communications(2024)10.1038/s41467-024-53318-x

N/A

0DataRank · unranked

3 citations

Howard Gamper, Yuka Yamaki, Thomas Christian, Robert Y. Henley, Nan‐Sheng Li +8 more

A kinetic model for compound heterozygous pathogenic variants in Tyrosyl-tRNA synthetase gene YARS2-Associated neonatal phenotype

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.108092

N/A

0DataRank · unranked

3 citations

Sunita Maharjan, Sitao Yin, Yuka Yamaki, Isao Masuda, Fenglin Li +5 more

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.26.586895

N/A

0DataRank · unranked

3 citations

Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Stuart Akeson +9 more

Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes

Nature Communications(2025)10.1038/s41467-025-56348-1

N/A

0DataRank · unranked

23 citations

Howard Gamper, Henri McGuigan, Sunita Maharjan, Jiatong Li, Zhiyi Sun +10 more

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess epitranscriptome plasticity in a neuronal cell line

Cell Systems(2025)10.1016/j.cels.2025.101238

N/A

0DataRank · unranked

10 citations

Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Stuart Akeson +9 more

An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting

Nature Communications(2025)10.1038/s41467-025-62342-4

N/A

0DataRank · unranked

6 citations

Ha An Nguyen, Haixing Li, Mattingly JM, Nevette A. Bailey, Wei Ning +5 more

m6A modification is incorporated into bacterial mRNA without specific functional benefit

Nucleic Acids Research(2025)10.1093/nar/gkaf425

N/A

0DataRank · unranked

7 citations

Leonardo Santos, Thomas Christian, Sunita Maharjan, Amir Dorsey, Isao Masuda +6 more

Structural basis for retron co-option of anti-phage ATPase-nuclease

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01702-6

N/A

0DataRank · unranked

7 citations

Renee D. Hoffman, Ya-Ming Hou, Hong Li, Bing Wang

Discovery of 5-Chlorotryptophan-Containing Antibiotics through Metabologenomics-assisted High-throughput Screening

The Medicine Forum(2025)10.26434/chemrxiv-2025-0q83g

N/A

0DataRank · unranked

0 citations

Isao Masuda, Angela L. Nichols, Edward Kalkreuter, Dong Yang, Thomas Christian +4 more

Enzymes in high-throughput RNA sequencing: Applications and challenges

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2025.10.007

N/A

0DataRank · unranked

0 citations

Howard Gamper, Ya-Ming Hou, Yuko Nakano

tRNA methylation: An unexpected link to bacterial resistance and persistence to antibiotics and beyond

Wiley Interdisciplinary Reviews - RNA(2020)10.1002/wrna.1609

N/A

0DataRank · unranked

22 citations

Isao Masuda, Leonard Foster, Ya-Ming Hou