Chun Jimmie Ye

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.3Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

Nature Genetics(2024)10.1038/s41588-024-01685-y

Top 9%

2.3DataRank

Top 9%179 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

Papers

Driven by 95 papers — median percentile 91. Top paper: “Evaluation of SARS-CoV-2 serology assays reveals a range of test performance”.

Evaluation of SARS-CoV-2 serology assays reveals a range of test performance

Nature Biotechnology(2020)10.1038/s41587-020-0659-0

N/A

15.0DataRank · unranked

299 citations

Joseph Hiatt, Cody T. Mowery, Brian R. Shy, Ruby Yu, Tori N. Yamamoto +67 more

Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer

Cell(2020)10.1016/j.cell.2020.05.017

N/A

5.5DataRank · unranked

749 citations

Serena S. Kwek, Siddharth S. Raju, Tony Li, Elizabeth McCarthy, Eric D. Chow +15 more

The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type 1 diabetes

JCI Insight(2021)10.1172/jci.insight.147474

N/A

3.4DataRank · unranked

223 citations

Kamir J. Hiam-Galvez, Cody T. Mowery, Kevan C. Herold, Stephen E. Gitelman, Jonathan H. Esensten +15 more

Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

Cell(2023)10.1016/j.cell.2023.08.041

N/A

3.4DataRank · unranked

190 citations

Nadav Brandes, Raymund Bueno, Marena Trinidad, Thomas Mazumder, Bingfei Yu +18 more

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Genome Research(2018)10.1101/gr.240390.118

N/A

2.3DataRank · unranked

78 citations

Jenny Chen, Rachel E. Gate, Meena Subramaniam, Tushar Bhangale, Mark N. Lee +18 more

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

Nature Genetics(2024)10.1038/s41588-024-01685-y

Top 9%

2.3DataRank

Top 9%179 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

Circulating monocytes associated with anti-PD-1 resistance in human biliary cancer induce T cell paralysis

Cell Reports(2022)10.1016/j.celrep.2022.111384

N/A

1.1DataRank · unranked

41 citations

Elizabeth McCarthy, Arielle Ilano, Hai Yang, Li Zhang, Kathryn M. Allaire +14 more

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

Nature Biotechnology(2017)10.1038/nbt.4042

N/A

1.1DataRank · unranked

1264 citations

Meena Subramaniam, Sasha Targ, Michelle Nguyen, Lenka Maliskova, Elizabeth McCarthy +11 more

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Science(2014)10.1126/science.1249547

N/A

0.948DataRank · unranked

556 citations

Sara Mostafavi, Chun Jimmie Ye, Mark N. Lee, Joseph M. Replogle, Ting Feng +22 more

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

Science(2022)10.1126/science.abf1970

N/A

0.939DataRank · unranked

522 citations

M. Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C. Hartoularos, Sasha Targ +25 more

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks

Cell(2015)10.1016/j.cell.2015.06.059

N/A

0.918DataRank · unranked

455 citations

Marko Jovanovic, Rebecca H. Herbst, Atray Dixit, Chun Jimmie Ye, Dariusz Przybylski +13 more

Parsing the Interferon Transcriptional Network and Its Disease Associations

Cell(2016)10.1016/j.cell.2015.12.032

N/A

0.877DataRank · unranked

345 citations

Hideyuki Yoshida, Devapregasan Moodley, Hugo LeBoité, Katherine Rothamel, Towfique Raj +17 more

CRISPR activation and interference screens decode stimulation responses in primary human T cells

Science(2022)10.1126/science.abj4008

N/A

0.866DataRank · unranked

320 citations

Zachary Steinhart, Madeline Layeghi, Jacob W. Freimer, Raymund Bueno, Vinh Nguyen +4 more

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

Nature Genetics(2013)10.1038/ng.2543

N/A

0.862DataRank · unranked

313 citations

Andreas Gnirke, David B. Jaffe, Veronika Barešová, Nathalie Pochet, Brendan Blumenstiel +43 more

Intersection of population variation and autoimmunity genetics in human T cell activation

Science(2014)10.1126/science.1254665

N/A

0.837DataRank · unranked

264 citations

Ting Feng, Ho-Keun Kwon, Towfique Raj, Michael T. Wilson, Natasha Asinovski +14 more

Cell-subtype specific effects of genetic variation in the aging and Alzheimer cortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.07.515446

N/A

0.808DataRank · unranked

35 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

Nature Genetics(2018)10.1038/s41588-018-0156-2

N/A

0.799DataRank · unranked

205 citations

Christine S. Cheng, Aviva P. Aiden, Atsede Siba, Marcin Tabaka, Dmytro Lituiev +19 more

Lineage dynamics of murine pancreatic development at single-cell resolution

Nature Communications(2018)10.1038/s41467-018-06176-3

N/A

0.791DataRank · unranked

194 citations

Daniel M. Wong, Meena Subramaniam, Nathaniel P. Meyer, Caroline L. Gilchrist, Sarah M. Knox +4 more

Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease Activity

JCI Insight(2024)10.1172/jci.insight.178499

N/A

0.790DataRank · unranked

41 citations

Brenda Y. Miao, Camilla Wibrand, Monica M. Yang, Dmitry Rychkov, Emily Flynn +18 more

Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533709

N/A

0.762DataRank · unranked

16 citations

Nadav Brandes, Raymund Bueno, Marena Trinidad, Thomas Mazumder, Bingfei Yu +17 more

XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment

Science Advances(2021)10.1126/sciadv.abg4755

N/A

0.717DataRank · unranked

118 citations

Derek Bogdanoff, Yutong Wang, George C. Hartoularos, Jonathan M. Woo, Cody T. Mowery +14 more

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

Nature Communications(2020)10.1038/s41467-020-19365-w

N/A

0.635DataRank · unranked

68 citations

Tommer Schwarz, Arunabha Majumdar, Kangcheng Hou, Leah Briscoe, Richard K. Perez +7 more

SCITO-seq: single-cell combinatorial indexed cytometry sequencing

Nature Methods(2021)10.1038/s41592-021-01222-3

N/A

0.624DataRank · unranked

63 citations

David Lee, Whitney Tamaki, Yang Sun, Anton Ogorodnikov, George C. Hartoularos +8 more

The evolution of computational research in a data-centric world

Cell(2024)10.1016/j.cell.2024.07.045

N/A

0.563DataRank · unranked

15 citations

Karishma Chhugani, Tejasvene Ramesh, Matteo Pellegrini, Sagiv Shifman, Malak S. Abedalthagafi +18 more

Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia

Nature Communications(2024)10.1038/s41467-024-53566-x

N/A

0.549DataRank · unranked

16 citations

Alexandra Tsitsiklis, Victoria Chu, Hoang Van Phan, Catherine DeVoe, Christina Love +87 more

Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq

Nature Communications(2023)10.1038/s41467-023-41788-4

N/A

0.542DataRank · unranked

36 citations

Andreas S. Puschnik, Joseph M. Replogle, Matthew T. Laurie, Jamin Liu, Beth Shoshana Zha +13 more

Protracted neuronal recruitment in the temporal lobes of young children

Nature(2023)10.1038/s41586-023-06981-x

N/A

0.533DataRank · unranked

34 citations

Sean Biagiotti, Vicente Herranz‐Pérez, Samara Santiago, Raymund Bueno, Chun Jimmie Ye +10 more

Multi-context genetic modeling of transcriptional regulation resolves novel disease loci

Nature Communications(2022)10.1038/s41467-022-33212-0

N/A

0.524DataRank · unranked

32 citations

Mary Grace Gordon, Andrew Lu, Anchit Tandon, Eran Halperin, Alexander Gusev +4 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.28.359935

N/A

0.489DataRank · unranked

25 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +34 more

Cell‐Specific Transposable Element and Gene Expression Analysis Across Systemic Lupus Erythematosus Phenotypes

ACR Open Rheumatology(2024)10.1002/acr2.11713

N/A

0.312DataRank · unranked

7 citations

Sarah L. Patterson, Lenka Maliskova, Kimberly E. Taylor, Chun Jimmie Ye, Maria Dall’Era +8 more

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/188961

N/A

0.305DataRank · unranked

3 citations

Jenny Chen, Rachel E. Gate, Meena Subramaniam, Tushar Bhangale, Mark N. Lee +18 more

Naïve arthritogenic SKG T cells have a defect in anergy and a repertoire pruned by superantigen

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.13.476250

N/A

0.208DataRank · unranked

3 citations

Elizabeth McCarthy, Steven Yu, Noah Perlmutter, Charles C. Lin, Joe DeRisi +3 more

Learning antibody sequence constraints from allelic inclusion

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.22.619760

N/A

0.104DataRank · unranked

1 citations

Chloe Hsu, Thomas Mazumder, Kevin Sung, William S. DeWitt, Jennifer Listgarten +4 more

Determining gene specificity from multivariate single-cell RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.21.689845

N/A

0.104DataRank · unranked

1 citations

A. Sina Booeshaghi, Elisabeth Rebboah, M. Grace Gordon, Pooja Kathail, Taibo Li +6 more

Reply to Barton et al: signatures of natural selection during the Black Death

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.06.535944

N/A

0DataRank · unranked

3 citations

Jennifer Klunk, Christian E. Demeure, Xiaoheng Cheng, Mari Shiratori, Julien Madej +27 more

Coordinated immune dysregulation in Juvenile Dermatomyositis revealed by single-cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.07.566033

N/A

0DataRank · unranked

3 citations

Camilla Wibrand, Emily Flynn, George C. Hartoularos, Yang Sun, Chun Jimmie Ye +5 more

ADPKD-Causing Missense Variants in Polycystin-1 Disrupt Cell Surface Localization or Polycystin Channel Function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.570035

N/A

0DataRank · unranked

3 citations

Gabriel B. Loeb, Meyeon Park, Mohona Gupta, Yukako Akiyama, Jillian Argiris +8 more

CD4+ CAR T-cell exhaustion associated with early relapse of multiple myeloma after BCMA CAR T-cell therapy

Blood Advances(2024)10.1182/bloodadvances.2023012416

N/A

0DataRank · unranked

44 citations

Zenghua Fan, Kaichun Wu, Elizabeth McCarthy, Axel Hyrenius‐Wittsten, Alec Starzinski +14 more

Method of moments framework for differential expression analysis of single-cell RNA sequencing data

Cell(2024)10.1016/j.cell.2024.09.044

N/A

0DataRank · unranked

41 citations

Rachel E. Gate, David Lee, Andrew Tolopko, Andrew Lu, Erin Gordon +6 more

Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function

Nature Genetics(2024)10.1038/s41588-024-01904-6

N/A

0DataRank · unranked

27 citations

Pooja Kathail, Richard W. Shuai, Ryan Chung, Reinier J. Grona, Sailaja Peddada +14 more

Current genomic deep learning models display decreased performance in cell type-specific accessible regions

Genome biology(2024)10.1186/s13059-024-03335-2

N/A

0DataRank · unranked

17 citations

Richard W. Shuai, Ryan Chung, Chun Jimmie Ye, Gabriel B. Loeb, Nilah M. Ioannidis +1 more

Coordinated immune dysregulation in juvenile dermatomyositis revealed by single-cell genomics

JCI Insight(2024)10.1172/jci.insight.176963

N/A

0DataRank · unranked

14 citations

Camilla Wibrand, Emily Flynn, George C. Hartoularos, Yang Sun, Chioma J. Madubata +7 more

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

Nature Communications(2024)10.1038/s41467-024-49756-2

N/A

0DataRank · unranked

19 citations

Ravi K. Patel, Aartik Sarma, K. Mark Ansel, Stephanie A. Christenson, Michael Adkisson +75 more

Systematic decoding of cis gene regulation defines context-dependent control of the multi-gene costimulatory receptor locus in human T cells

Nature Genetics(2024)10.1038/s41588-024-01743-5

N/A

0DataRank · unranked

14 citations

Jacob W. Freimer, Zeyu Chen, Salvador Casaní-Galdón, Jennifer M. Umhoefer, Maya M. Arce +17 more

Physical inactivity exacerbates pathologic inflammatory signalling at the single cell level in patients with systemic lupus

EBioMedicine(2024)10.1016/j.ebiom.2024.105432

N/A

0DataRank · unranked

7 citations

Hoang Van Phan, Chun Jimmie Ye, Cristina M. Lanata, Sebastián Cruz-González, Joon‐Suk Park +8 more

Changes in DNA methylation are associated with systemic lupus erythematosus flare remission and clinical subtypes

Clinical Epigenetics(2024)10.1186/s13148-024-01792-x

N/A

0DataRank · unranked

6 citations

Joanne Nititham, Kimberly E. Taylor, Patricia Katz, Chun Jimmie Ye, Jinoos Yazdany +6 more

Endogenous antigens shape the transcriptome and TCR repertoire in an autoimmune arthritis model

Journal of Clinical Investigation(2024)10.1172/jci174647

N/A

0DataRank · unranked

6 citations

Steven Yu, Noah Perlmutter, Yuka Nakao, Ryota Naito, Charles C. Lin +6 more

Functional genomics in inborn errors of immunity

Immunological Reviews(2024)10.1111/imr.13309

N/A

0DataRank · unranked

5 citations

Taylor N. LaFlam, Melissa Gearing, Chun Jimmie Ye, Charlotte Hurabielle

Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.18.599625

N/A

0DataRank · unranked

5 citations

Pooja Kathail, Richard W. Shuai, Ryan Chung, Reinier J. Grona, Sailaja Peddada +14 more

In vivo engineering of murine T cells using the evolved adeno-associated virus variant Ark313

Immunity(2025)10.1016/j.immuni.2025.01.009

N/A

0DataRank · unranked

27 citations

Charlotte H. Wang, Jonathan Ark, Chang Liu, Sylvanie Clouden, Anita Qualls +23 more

Identification and regulation of circulating tumor-TCR-matched cytotoxic CD4+ lymphocytes by KLRG1 in bladder cancer

JCI Insight(2025)10.1172/jci.insight.177373

N/A

0DataRank · unranked

4 citations

Hai Yang, Tony Li, Arielle Ilano, Eric D. Chow, Li Zhang +13 more

Precision medicine: Crossing the biomedical scales with AI

The Journal of Precision Medicine Health and Disease(2025)10.1016/j.premed.2025.100010

N/A

0DataRank · unranked

3 citations

Gary D. Bader, Sergio E. Baranzini, John A. Capra, Marina Sirota, Christina V. Theodoris +2 more

A20’s linear ubiquitin–binding motif restrains pathogenic activation of Th17 cells and IL-22–driven enteritis

Journal of Clinical Investigation(2025)10.1172/jci187499

N/A

0DataRank · unranked

3 citations

Dorothea Stibor, Xiaofei Sun, Nika Lenci, Hiromichi Shimizu, Emily F. Yamashita +10 more

Learning antibody sequence constraints from allelic inclusion

Cell Systems(2025)10.1016/j.cels.2025.101368

N/A

0DataRank · unranked

1 citations

Chloe Hsu, Thomas Mazumder, Kevin Sung, William S. DeWitt, Jennifer Listgarten +4 more

Phenotypic pleiotropy of missense variants in human B cell confinement receptor P2RY8

Cell Genomics(2025)10.1016/j.xgen.2025.100981

N/A

0DataRank · unranked

2 citations

Christian B. Billesbølle, Tuan Dinh, Finn D. Wolfreys, Erick Lu, Tomas Matteson +9 more

ANTIPODE Provides a Global View of Cell Type Homology and Transcriptomic Divergence in the Developing Mammalian Brain

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.18.683238

N/A

0DataRank · unranked

3 citations

Jiasheng Ding, Sara Nolbrant, Reed McMullen, Chang N. Kim, Bryan J. Pavlovic +5 more

Transcriptomic analysis reveals immune signatures associated with specific cutaneous manifestations of lupus in systemic lupus erythematosus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.27.649460

N/A

0DataRank · unranked

0 citations

Sarah Patterson, Zachary Cutts, Cristina M. Lanata, Maria Dall’Era, Jinoos Yazdany +7 more

Epigenetic attenuation of interferon signaling drives aging-related improvements in systemic lupus

medRxiv(2025)10.1101/2025.01.27.25321143

N/A

0DataRank · unranked

0 citations

Hoang Van Phan, Sarah L. Patterson, Ana Laura Almonte Loya, Cristina M. Lanata, Christina Love +19 more

Programmable microparticles rewire CAR signaling to enable super-physiological expansion of human T cells in vitro

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.17.665438

N/A

0DataRank · unranked

0 citations

Landon Flemming, Yuanzhou Chen, Thomas Mazumder, Heinz Hammerlindl, Greg M. Allen +10 more

Base-editing a single missense mutation in A20 enhances CAR-T cell efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.05.680562

N/A

0DataRank · unranked

0 citations

Stefanie Bachl, Luis R Sandoval, Carter Ching, Christopher Bowman, Nupura Kale +22 more

Deciphering Cell-types and Gene Signatures Associated with Disease Activity in Rheumatoid Arthritis using Single Cell RNA-sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.560352

N/A

0DataRank · unranked

0 citations

B. Y. Miao, C. Wibrand, M.M. Yang, D. Rychkov, E. Flynn +31 more

Functional characterization of Alzheimer’s disease genetic variants in microglia

UNC Libraries(2025)10.17615/jm1j-1y96

N/A

0DataRank · unranked

0 citations

Yang Sun, Xiaoyu Yang, Mirunalini Ravichandran, Han Yang, Jia Wen +22 more

Identification d’une signature en Single Cell transcriptomique associée à l’activité de la maladie dans la polyarthrite rhumatoïde

Revue du Rhumatisme(2023)10.1016/j.rhum.2023.10.039

N/A

0DataRank · unranked

0 citations

C. Wibrand, M. Yang, D. Rychkov, E. Flynn, J. Nititham +31 more

Pooled Knockin Targeting for Genome Engineering of Cellular Immunotherapies

Cell(2020)10.1016/j.cell.2020.03.039

N/A

0DataRank · unranked

189 citations

P. Jonathan Li, Franziska Blaeschke, Jasper F. Nies, Ryan Apathy, Cody T. Mowery +14 more

Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM

Scientific Reports(2020)10.1038/s41598-020-67513-5

N/A

0DataRank · unranked

106 citations

Elior Rahmani, Brandon Jew, Kristina M. Garske, Zong Miao, Jihane N. Benhammou +6 more

Functional CRISPR dissection of gene networks controlling human regulatory T cell identity

Nature Immunology(2020)10.1038/s41590-020-0784-4

N/A

0DataRank · unranked

95 citations

Siddharth S. Raju, Michael Lauber, Saskia Kolb, Eric Shifrut, Jessica T. Cortez +16 more

IL-27: An endogenous constitutive repressor of human monocytes

Clinical Immunology(2020)10.1016/j.clim.2020.108498

N/A

0DataRank · unranked

16 citations

Allison McHenry, Roxanne Phillips, Chun Jimmie Ye, Angelina Bernier, Lori M. Laffel +3 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19.

Research Square(2020)10.21203/rs.3.rs-97042/v1

N/A

0DataRank · unranked

8 citations

Alexis J. Combes, Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray +34 more

Improved COVID-19 Serology Test Performance by Integrating Multiple Lateral Flow Assays using Machine Learning

medRxiv(2020)10.1101/2020.07.15.20154773

N/A

0DataRank · unranked

4 citations

Alexander Marson, Yun S. Song, Chun Jimmie Ye, Cody T. Mowery

Global absence and targeting of protective immune states in severe COVID-19

Nature(2021)10.1038/s41586-021-03234-7

N/A

0DataRank · unranked

279 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +60 more

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Science Translational Medicine(2021)10.1126/scitranslmed.abh2624

N/A

0DataRank · unranked

239 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

CCR2 deficiency alters activation of microglia subsets in traumatic brain injury

Cell Reports(2021)10.1016/j.celrep.2021.109727

N/A

0DataRank · unranked

77 citations

Joshua Rudolph, Isabella Imhof, Luyi Li, Eréne C. Niemi, Judy K. Shigenaga +19 more

Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Naive T Cells

Cell Reports(2021)10.1016/j.celrep.2020.108573

N/A

0DataRank · unranked

61 citations

Yelena Bronevetsky, Elisabeth Krow‐Lucal, Nirav R. Bhakta, Charles C. Kim, Srilaxmi Nerella +10 more

Monoclonal antibody-mediated neutralization of SARS-CoV-2 in an IRF9-deficient child

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2114390118

N/A

0DataRank · unranked

34 citations

Peng Zhang, Paul Bastard, Karim Dorgham, Isabelle Melki, Alice Hadchouel +17 more

No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells

BMC Biology(2021)10.1186/s12915-020-00941-x

N/A

0DataRank · unranked

21 citations

David Siegel, Guorui Xie, George C. Hartoularos, Mars Stone, Chun Jimmie Ye +4 more

Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.09.434529

N/A

0DataRank · unranked

29 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

FastGxC: Fast and Powerful Context-Specific eQTL Mapping in Bulk and Single-Cell Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.17.448889

N/A

0DataRank · unranked

11 citations

Andrew Lu, Mike Thompson, Cuining Liu, M. Grace Gordon, Amanda Ramste +7 more

Pooled screening of CAR T cells identifies non-native signaling domains for next-generation immunotherapies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.11.451980

N/A

0DataRank · unranked

5 citations

Camillia S. Azimi, Kendall Kearns, Kiavash Garakani, Julie Garcia, Nisarg Patel +8 more

Multi-modal single-cell sequencing identifies cellular immunophenotypes associated with juvenile dermatomyositis disease activity

medRxiv(2021)10.1101/2021.09.18.21263581

N/A

0DataRank · unranked

4 citations

George C. Hartoularos, Daniel Bunis, Yang Sun, David Lee, Hanna Kim +3 more

Evolution of immune genes is associated with the Black Death

Nature(2022)10.1038/s41586-022-05349-x

N/A

0DataRank · unranked

250 citations

Tauras P. Vilgalys, Christian E. Demeure, Xiaoheng Cheng, Mari Shiratori, Julien Madej +27 more

Obesity alters pathology and treatment response in inflammatory disease

Nature(2022)10.1038/s41586-022-04536-0

N/A

0DataRank · unranked

244 citations

Caroline Whitty, Cody T. Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang +38 more

The development and evolution of inhibitory neurons in primate cerebrum

Nature(2022)10.1038/s41586-022-04510-w

N/A

0DataRank · unranked

124 citations

Kadellyn Sandoval, C.P. Chen, Mohammed A. Mostajo-Radji, William W. Seeley, Tomasz J. Nowakowski +4 more

Combined Single Cell Transcriptome and Surface Epitope Profiling Identifies Potential Biomarkers of Psoriatic Arthritis and Facilitates Diagnosis via Machine Learning

Frontiers in Immunology(2022)10.3389/fimmu.2022.835760

N/A

0DataRank · unranked

49 citations

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Immunity(2022)10.1016/j.immuni.2022.06.004

N/A

0DataRank · unranked

27 citations

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Frontiers in Immunology(2022)10.3389/fimmu.2022.902232

N/A

0DataRank · unranked

27 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.25.505311

N/A

0DataRank · unranked

26 citations

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Modular Pooled Discovery of Synthetic Knockin Sequences to Program Durable Cell Therapies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.27.501186

N/A

0DataRank · unranked

8 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.15.500120

N/A

0DataRank · unranked

4 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.19.484996

N/A

0DataRank · unranked

2 citations

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medRxiv(2022)10.1101/2022.11.07.22282049

N/A

0DataRank · unranked

0 citations

Haridha Shivram, Jason A. Vander Heiden, Christopher C. Overall, Luz D. Orozco, Xia Gao +49 more

Genome-wide prediction of disease variant effects with a deep protein language model

Nature Genetics(2023)10.1038/s41588-023-01465-0

N/A

0DataRank · unranked

451 citations

Grant Goldman, Charlotte H. Wang, Chun Jimmie Ye, Vasilis Ntranos, Nadav Brandes

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Nature(2023)10.1038/s41586-023-06835-6

N/A

0DataRank · unranked

94 citations

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Nature Genetics(2023)10.1038/s41588-023-01506-8

N/A

0DataRank · unranked

76 citations

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Modular pooled discovery of synthetic knockin sequences to program durable cell therapies

Cell(2023)10.1016/j.cell.2023.08.013

N/A

0DataRank · unranked

65 citations

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iScience(2023)10.1016/j.isci.2023.107813

N/A

0DataRank · unranked

12 citations

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