🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Sean R. Eddy

Harvard University

ORCID: 0000-0001-6676-4706

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.6Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

Papers

Driven by 16 papers — median percentile 99. Top paper: “HMMER web server: 2015 update”.

HMMER web server: 2015 update

Nucleic Acids Research(2015)10.1093/nar/gkv397

N/A

13.3DataRank · unranked

1020 citations

Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber +3 more

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

Nucleic Acids Research(1997)10.1093/nar/25.5.955

N/A

1.5DataRank · unranked

15868 citations

Sean R. Eddy, Todd M. Lowe

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

Nucleic Acids Research(2020)10.1093/nar/gkaa1047

N/A

1.1DataRank · unranked

1113 citations

Eric P. Nawrocki, Nancy Ontiveros‐Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz +10 more

Codetta: predicting the genetic code from nucleotide sequence

Bioinformatics(2022)10.1093/bioinformatics/btac802

N/A

0.515DataRank · unranked

30 citations

Sean R. Eddy, Yekaterina Shulgina

Constructing benchmark test sets for biological sequence analysis using independent set algorithms

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009492

N/A

0.464DataRank · unranked

21 citations

Sean R. Eddy, Samantha Petti

Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice

eLife(2024)10.7554/elife.103109

N/A

0.433DataRank · unranked

10 citations

P. R. K. Richardson, Christopher Kirby, Sean R. Eddy, Hopi E. Hoekstra, Jenny Chen

Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice

eLife(2025)10.7554/elife.103109.3

N/A

0.292DataRank · unranked

6 citations

P. R. K. Richardson, Christopher Kirby, Sean R. Eddy, Hopi E. Hoekstra, Jenny Chen

HMMER web server: 2026 update

Nucleic Acids Research(2026)10.1093/nar/gkag373

N/A

0.165DataRank · unranked

2 citations

Martín Beracochea, Alexander B Rogers, Sean R. Eddy, Nicholas P Carter, ROBERT FINN +1 more

Remote homology search with hidden Potts models

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008085

N/A

0DataRank · unranked

55 citations

Sean R. Eddy, Grey W. Wilburn

A computational screen for alternative genetic codes in over 250,000 genomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.18.448887

N/A

0DataRank · unranked

1 citations

Sean R. Eddy, Yekaterina Shulgina

Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.22.608850

N/A

0DataRank · unranked

6 citations

P. R. K. Richardson, Christopher Kirby, Sean R. Eddy, Hopi E. Hoekstra, Jenny Chen

Author response: Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice

(2024)10.7554/elife.103109.1.sa0

N/A

0DataRank · unranked

0 citations

P. R. K. Richardson, Christopher Kirby, Sean R. Eddy, Hopi E. Hoekstra, Jenny Chen

A glomerular transcriptomic landscape of apolipoprotein L1 in Black patients with focal segmental glomerulosclerosis

Kidney International(2021)10.1016/j.kint.2021.10.041

N/A

0DataRank · unranked

20 citations

Damian Fermin, Felix Eichinger, Dongkeun Jang, Matthias Kretzler, Noël P. Burtt +90 more

Many, but not all, lineage-specific genes can be explained by homology detection failure

PLoS Biology(2020)10.1371/journal.pbio.3000862

N/A

0DataRank · unranked

190 citations

Andrew W. Murray, Sean R. Eddy, Caroline M. Weisman

Remote homology search with hidden Potts models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.168153

N/A

0DataRank · unranked

31 citations

Sean R. Eddy, Grey W. Wilburn