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HMMER web server: 2015 update

Nucleic Acids Research(2015)10.1093/nar/gkv397Source: DataRank Database

HMMER web server: 2015 update is a research paper published in Nucleic Acids Research (2015). On theSindex it has a DataRank of 13.3. It has been cited 1,020 times, with 200 citing works in its 1-hop citation network.

N/A

13.3DataRank · unranked

Scored on demand from live citation data

1,020 citations · 200 citing works in its network

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Linked data & code

pfam uniprot

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)OA: goldTopics (31)IDs (PubMed, PMC)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (0/2)

Interoperable (0/2)

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

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DataRank Breakdown

Base Score 8%Citation Network 92%

Base Score Contribution

1.0

From this paper's citation signal

Citation Network Contribution

12.3

From 200 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 200 citers.

CATH: an expanded resource to predict protein function through structure and sequence
Nucleic Acids Research2016424 citations26 referencesContributes 0.233
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
Bioinformatics2018721 citations31 referencesContributes 0.212
BRENDA in 2017: new perspectives and new tools in BRENDA
Nucleic Acids Research2016289 citations27 referencesContributes 0.210
oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements
Nucleic Acids Research2018341 citations29 referencesContributes 0.201
TADB 2.0: an updated database of bacterial type II toxin–antitoxin loci
Nucleic Acids Research2017241 citations29 referencesContributes 0.189

Authors (8)

Jody Clements ORCID,William Arndt,Benjamin L. Miller ORCID,Travis J. Wheeler ORCID,Fabian Schreiber ORCID

Live enrichment

PubMed:25943547 PMC:PMC4489315

Wellcome Trust

Grant: unidentified

unidentified

Howard Hughes Medical Institute

goldLicense: CC BY

publisherhttp://academic.oup.com/nar/article-pdf/43/W1/W30/7476170/gkv397.pdf

Europe_PMChttps://europepmc.org/articles/PMC4489315

Europe_PMChttps://europepmc.org/articles/PMC4489315?pdf=render

https://doi.org/10.1093/nar/gkv397

https://academic.oup.com/nar/article-pdf/43/W1/W30/7476170/gkv397.pdf

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciencesAlgorithmsDatabases, ProteinInternetMarkov ChainsProtein Structure, TertiarySequence AlignmentSequence Analysis, ProteinSequence Homology, Amino AcidSoftware

MeSH Terms

Markov ChainsSequence AlignmentSequence Analysis, ProteinProtein Structure, TertiarySequence Homology, Amino AcidAlgorithmsInternetSoftwareDatabases, Protein

Keywords

InternetSequence Homology, Amino AcidSequence Analysis, ProteinWeb Server issueDatabases, ProteinSequence AlignmentAlgorithmsMarkov ChainsSoftwareProtein Structure, Tertiary