Timothy J. Griffin

Also affiliated with University of Minnesota System, University of Minnesota Medical Center

ChemistryBiochemistry, Genetics and Molecular BiologyDentistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 37 papers. Top paper: “The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View”.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Trends in cancer(2020)10.1016/j.trecan.2020.01.004

N/A

6.0DataRank · unranked

268 citations

Vincent B. Young, Joseph D. Skufca, Fiona Ginty, Traci L. Testerman, Alexander T. Pearson +25 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247

N/A

1.1DataRank · unranked

1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

Metabolite profiles associated with disease progression in influenza infection

PLoS ONE(2021)10.1371/journal.pone.0247493

N/A

0.777DataRank · unranked

21 citations

Sandra Castro‐Pearson, Jennifer Proper, Sarah Pett, Timothy J. Griffin, Virginia L. Kan +6 more

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Nature Communications(2021)10.1038/s41467-021-27542-8

N/A

0.729DataRank · unranked

128 citations

Benoît J. Kunath, Kay Schallert, Stephanie Serena Schäpe, Paul E. Abraham, Jean Armengaud +40 more

The microbiologist's guide to metaproteomics

iMeta(2025)10.1002/imt2.70031

N/A

0.593DataRank · unranked

51 citations

Jean Armengaud, Dirk Benndorf, J. Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng +27 more

Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

PROTEOMICS(2025)10.1002/pmic.202400187

N/A

0.434DataRank · unranked

17 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

F1000Research(2021)10.12688/f1000research.28608.1

N/A

0.313DataRank · unranked

5 citations

Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen +8 more

Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.05.433915

N/A

0DataRank · unranked

12 citations

Benoît J. Kunath, Kay Schallert, Stephanie Serena Schäpe, Paul E. Abraham, Jean Armengaud +40 more

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)

medRxiv(2021)10.1101/2021.02.09.21251427

N/A

0DataRank · unranked

0 citations

Subina Mehta, Dinh Duy An Nguyen, Björn Grüning, James E. Johnson, Thomas McGowan +3 more

Novel 4-Hydroxybenzyl Adducts in Human Hemoglobin: Structures and Mechanisms of Formation

Chemical Research in Toxicology(2021)10.1021/acs.chemrestox.1c00111

N/A

0DataRank · unranked

7 citations

Lorena Ndreu, Suresh S. Pujari, Timothy J. Griffin, Margareta Törnqvist, Isabella Karlsson +2 more

Lung proteome and metabolome endotype in HIV-associated obstructive lung disease

ERJ Open Research(2022)10.1183/23120541.00332-2022

N/A

0DataRank · unranked

9 citations

Eric F. Lock, Monica Kruk, Alison Morris, Janice M. Leung, Ken M. Kunisaki +3 more

Quantitative Proteogenomic Characterization of Inflamed Murine Colon Tissue Using an Integrated Discovery, Verification, and Validation Proteogenomic Workflow

Proteomes(2022)10.3390/proteomes10020011

N/A

0DataRank · unranked

2 citations

Qiyuan Han, Subina Mehta, Praveen Kumar, Pratik Jagtap, Charles G. Knutson +4 more

Galaxy Training: A Powerful Framework for Teaching!

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.02.494505

N/A

0DataRank · unranked

2 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples

Research Square(2022)10.21203/rs.3.rs-2247886/v1

N/A

0DataRank · unranked

2 citations

Monica Kruk, LeeAnn Higgins, Todd W. Markowski, Pratik Jagtap, Subina Mehta +5 more

Galaxy Training: A powerful framework for teaching!

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010752

N/A

0DataRank · unranked

109 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples

Clinical Proteomics(2023)10.1186/s12014-023-09404-1

N/A

0DataRank · unranked

22 citations

Monica Kruk, LeeAnn Higgins, Todd W. Markowski, Pratik Jagtap, Subina Mehta +5 more

Compartment-specific protein interactions in beryllium lung disease

ERJ Open Research(2023)10.1183/23120541.00138-2023

N/A

0DataRank · unranked

4 citations

Brian Vestal, Margaret M. Mroz, Sucai Liu, Kristyn MacPhail, Timothy J. Griffin +4 more

A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568121

N/A

0DataRank · unranked

2 citations

Subina Mehta, Reid Wagner, Dechen Bhuming, Andrew T. Rajczewski, Amy P.N. Skubitz +4 more

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae410

N/A

0DataRank · unranked

865 citations

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon +95 more

Dichotomous intronic polyadenylation profiles reveal multifaceted gene functions in the pan-cancer transcriptome

Experimental & Molecular Medicine(2024)10.1038/s12276-024-01289-w

N/A

0DataRank · unranked

10 citations

Jinyoung Kim, Semo Jun, Mee Yeon Park, Ebbing P. de Jong, Jae‐Woong Chang +9 more

An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease

mSystems(2024)10.1128/msystems.00929-23

N/A

0DataRank · unranked

6 citations

Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E. Johnson +8 more

A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease

mSphere(2024)10.1128/msphere.00793-23

N/A

0DataRank · unranked

7 citations

Subina Mehta, Reid Wagner, Dechen Bhuming, Andrew T. Rajczewski, Amy P.N. Skubitz +4 more

The lung proteome in HIV-associated obstructive lung disease

ERJ Open Research(2024)10.1183/23120541.00204-2024

N/A

0DataRank · unranked

3 citations

Danielle O. Weise, Eric F. Lock, Ken M. Kunisaki, Alison Morris, Janice M. Leung +6 more

Novel approach to exploring protease activity and targets in HIV-associated obstructive lung disease using combined proteomic-peptidomic analysis

Respiratory Research(2024)10.1186/s12931-024-02933-9

N/A

0DataRank · unranked

1 citations

Monica Kruk, Eric F. Lock, Ken M. Kunisaki, Alison Morris, Janice M. Leung +7 more

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613707

N/A

0DataRank · unranked

6 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more

Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures

(2024)10.5194/egusphere-2023-3148

N/A

0DataRank · unranked

4 citations

Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, J. A. Breier, Margaret Mars Brisbin +36 more

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.629682

N/A

0DataRank · unranked

2 citations

Nikolaos Pechlivanis, Nikolaos Strepis, Pierre Amato, Matthias Bernt, Anshu Bhardwaj +31 more

Comment on egusphere-2023-3148

(2024)10.5194/egusphere-2023-3148-rc1

N/A

0DataRank · unranked

0 citations

Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, J. A. Breier, Margaret Mars Brisbin +36 more

Novel Approach to Exploring Protease Activity and Targets in HIV-associated Obstructive Lung Disease using Combined Proteomic-Peptidomic Analysis

Research Square(2024)10.21203/rs.3.rs-4433194/v1

N/A

0DataRank · unranked

0 citations

Monica Kruk, Eric F. Lock, Ken M. Kunisaki, Alison Morris, Janice M. Leung +7 more

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)

Clinical Proteomics(2021)10.1186/s12014-021-09321-1

N/A

0DataRank · unranked

10 citations

Subina Mehta, Dinh Duy An Nguyen, Björn Grüning, James E. Johnson, Thomas McGowan +3 more

Evaluation of the potential of Pap test fluid and cervical swabs to serve as clinical diagnostic biospecimens for the detection of ovarian cancer by mass spectrometry-based proteomics

Clinical Proteomics(2021)10.1186/s12014-020-09309-3

N/A

0DataRank · unranked

19 citations

Somaieh Afiuni‐Zadeh, Melissa A. Geller, Peter A. Argenta, Timothy J. Griffin, Amy P.N. Skubitz +1 more

The Microbiologist’s Guide to Metaproteomics

ChemRxiv(2025)10.26434/chemrxiv-2025-rh2q9

N/A

0DataRank · unranked

4 citations

Jean Armengaud, Dirk Benndorf, J. Blakeley-Ruiz, Madita Brauer, Kai Cheng +24 more

A modular, immunopeptidogenomic (iPepGen) analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidates

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.07.647596

N/A

0DataRank · unranked

0 citations

Reid Wagner, Katherine Do, James E. Johnson, Fengchao Yu, Tyler Jubenville +8 more

Comparative Performance of Scribe and Database Search Engines in Metaproteomic Profiling of a Ground-Truth Microbiome Dataset

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654320

N/A

0DataRank · unranked

0 citations

Subina Mehta, Reid Wagner, Wassim Gabriel, James E. Johnson, Katherine Do +7 more

Evaluation of Parallel Accumulation-Serial Fragmentation methods for metaproteomics using a model microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.13.670166

N/A

0DataRank · unranked

0 citations

Andrew T. Rajczewski, Katherine Do, Matthew Willets, Manuel Kleiner, Timothy J. Griffin +2 more

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

Journal of Proteomics(2025)10.1016/j.jprot.2025.105549

N/A

0DataRank · unranked

0 citations

Subina Mehta, Reid Wagner, Wassim Gabriel, James E. Johnson, Katherine Do +7 more

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

GigaScience(2020)10.1093/gigascience/giaa025

N/A

0DataRank · unranked

22 citations

James E. Johnson, Praveen Kumar, Ray Sajulga, Subina Mehta, Pratik Jagtap +2 more