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Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

Journal of Proteomics(2025)10.1016/j.jprot.2025.105549Source: DataRank Database

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset is a research paper published in Journal of Proteomics (2025). On theSindex it has a DataRank of 0.

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Enrichment:Funding (4 grants)Impact (FWCI 0.00)OA: greenTopics (27)IDs (PubMed, PMC, OpenAlex)Annotations (1)

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Open Access

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Reusable (0/3)

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Authors (12)

Subina Mehta ORCID,Reid Wagner,Wassim Gabriel ORCID,James E. Johnson ORCID,Katherine Do ORCID

Live enrichment

PubMed:41130385 PMC:PMC12962707 OpenAlex:https://openalex.org/W4415514493

National Institute of General Medical Sciences

Grant: R35GM138362

National Institute of General Medical Sciences

Grant: R35GM150723

National Institutes of Health National Cancer Institute

Grant: P30CA077598

European Research Council

Grant: 101077037

FWCI

0.00

Citation Percentile

0.1%

greenLicense: http://www.elsevier.com/open-access/userlicense/1.0/

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC12962707/

publisherhttps://api.elsevier.com/content/article/PII:S1874391925001769?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S1874391925001769?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.jprot.2025.105549

Fields of Study

Cell Image Analysis TechniquesAdvanced Proteomics Techniques and ApplicationsBiomedical Text Mining and OntologiesProteomicsMicrobiotaDatabases, ProteinSearch EngineTandem Mass SpectrometryBacterial Proteins

MeSH Terms

Bacterial ProteinsDatabases, ProteinProteomicsTandem Mass SpectrometrySearch EngineMicrobiota

Keywords

MetaproteomicsDatabase search engineSearch engineSequence databaseMascotProteogenomicsFalse discovery rateIdentification (biology)Reference databaseMass spectrometryData Dependent AcquisitionMicrobiomes

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

FAIR Checklist

Authors (12)

Funding (4 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)