Yidong Chen

The University of Texas at San Antonio Health Science Center

Also affiliated with Children's Hospital of San Antonio

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.431Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Integrative multi-omics characterization of hepatocellular carcinoma in Hispanic patients

JNCI Journal of the National Cancer Institute(2024)10.1093/jnci/djae207

Top 43%

0.431DataRank

Top 43%9 citations

Xiaojing Wang, Yu‐Chiao Chiu, Hakim Bouamar, Francis E. Sharkey, Jorge E. Lopera +15 more

Papers

Driven by 62 papers — median percentile 28. Top paper: “Reconstitution of human PDAC using primary cells reveals oncogenic transcriptomic features at tumor onset”.

Reconstitution of human PDAC using primary cells reveals oncogenic transcriptomic features at tumor onset

Nature Communications(2024)10.1038/s41467-024-45097-2

N/A

0.546DataRank · unranked

20 citations

Michael H. Nipper, A. Domínguez, Zhenqing Ye, Naoki Akanuma, Kevin Lopez +14 more

shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning

Patterns(2024)10.1016/j.patter.2023.100894

N/A

0.448DataRank · unranked

9 citations

Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang +3 more

Integrative multi-omics characterization of hepatocellular carcinoma in Hispanic patients

JNCI Journal of the National Cancer Institute(2024)10.1093/jnci/djae207

Top 43%

0.431DataRank

Top 43%9 citations

Xiaojing Wang, Yu‐Chiao Chiu, Hakim Bouamar, Francis E. Sharkey, Jorge E. Lopera +15 more

BRCA1 deficiency in mature CD8+ T lymphocytes impairs antitumor immunity

Journal for ImmunoTherapy of Cancer(2023)10.1136/jitc-2022-005852

N/A

0.416DataRank · unranked

15 citations

Leilei Qi, Huai-Chin Chiang, Haihui Pan, Xiaowen Zhang, Alexandra Z. Greenbaum +11 more

mTOR inhibition abrogates human mammary stem cells and early breast cancer progression markers

Breast Cancer Research(2023)10.1186/s13058-023-01727-z

N/A

0.405DataRank · unranked

7 citations

Larry E. Broome, Kate Lathrop, Ismail Jatoi, Andrew Brenner, Alia Nazarullah +6 more

Preclinical Development of Brain Permeable ERβ Agonist for the Treatment of Glioblastoma

Molecular Cancer Therapeutics(2023)10.1158/1535-7163.mct-23-0031

N/A

0.388DataRank · unranked

6 citations

Michael Tidwell, Henriette U. Balinda, Nicholas A. Clanton, Xue Yang, Suryavathi Viswanadhapalli +10 more

Defining function of wild-type and three patient-specific TP53 mutations in a zebrafish model of embryonal rhabdomyosarcoma

eLife(2023)10.7554/elife.68221

N/A

0.358DataRank · unranked

7 citations

Kunal Baxi, Amanda Lipsitt, Nicole R. Hensch, Long Wang, Prethish Sreenivas +17 more

BATF3-dependent induction of IL-27 in B cells bridges the innate and adaptive stages of the antibody response

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.117010

N/A

0DataRank · unranked

3 citations

Rui Wang, Jingwei Wang, Shuai Wu, María E. Fernández, Carlos Eduardo Rivera +17 more

Predicting and characterizing a cancer dependency map of tumors with deep learning

Science Advances(2021)10.1126/sciadv.abh1275

N/A

0DataRank · unranked

89 citations

Siyuan Zheng, Li‐Ju Wang, Brian S. Iskra, Manjeet K. Rao, Peter J. Houghton +3 more

Deep learning tackles single-cell analysis—a survey of deep learning for scRNA-seq analysis

Briefings in Bioinformatics(2021)10.1093/bib/bbab531

N/A

0DataRank · unranked

75 citations

Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu‐Chiao Chiu, Zhenqing Ye +8 more

Prediction and interpretation of cancer survival using graph convolution neural networks

Methods(2021)10.1016/j.ymeth.2021.01.004

N/A

0DataRank · unranked

62 citations

Yu‐Chiao Chiu, Songyao Zhang, Joshua Ramirez, Yidong Chen, Yufei Huang +2 more

GLI3 Is Stabilized by SPOP Mutations and Promotes Castration Resistance via Functional Cooperation with Androgen Receptor in Prostate Cancer

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-21-0108

N/A

0DataRank · unranked

28 citations

Janice Deng, Tai Qin, Thu Minh Duong, Yuqian Yan, Xiang Gu +14 more

Vertical Inhibition of the RAF–MEK–ERK Cascade Induces Myogenic Differentiation, Apoptosis, and Tumor Regression in H/NRASQ61X Mutant Rhabdomyosarcoma

Molecular Cancer Therapeutics(2021)10.1158/1535-7163.mct-21-0194

N/A

0DataRank · unranked

25 citations

Vanessa Del Pozo, Marielle E. Yohe, Craig M. Goodwin, Terry J. Shackleford, Long Wang +11 more

LIFR inhibition enhances the therapeutic efficacy of HDAC inhibitors in triple negative breast cancer

Communications Biology(2021)10.1038/s42003-021-02741-7

N/A

0DataRank · unranked

23 citations

Suryavathi Viswanadhapalli, Bindu Santhamma, Uday P. Pratap, Yiliao Luo, Junhao Liu +21 more

CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

BMC Bioinformatics(2021)10.1186/s12859-021-04157-w

N/A

0DataRank · unranked

21 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Milad Mostavi

M6A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

Cancer Research(2022)10.1158/0008-5472.can-21-2106

N/A

0DataRank · unranked

105 citations

Panneerdoss Subbarayalu, Daisy Medina, Saif Nirzhor, Santosh Timilsina, Subapriya Rajamanickam +12 more

Transformer for Gene Expression Modeling (T-GEM): An Interpretable Deep Learning Model for Gene Expression-Based Phenotype Predictions

Cancers(2022)10.3390/cancers14194763

N/A

0DataRank · unranked

51 citations

Md Musaddaqul Hasib, Yu‐Chiao Chiu, Zhifeng Han, Yufang Jin, Mario Flores +3 more

The antidepressant imipramine inhibits breast cancer growth by targeting estrogen receptor signaling and DNA repair events

Cancer Letters(2022)10.1016/j.canlet.2022.215717

N/A

0DataRank · unranked

36 citations

Subapriya Rajamanickam, Arhan Rao, Panneerdoss Subbarayalu, Saif Nirzhor, Nourhan Abdelfattah +8 more

Global profiling reveals common and distinct N6-methyladenosine (m6A) regulation of innate immune responses during bacterial and viral infections

Cell Death and Disease(2022)10.1038/s41419-022-04681-4

N/A

0DataRank · unranked

32 citations

Teng Zhang, Océane Sorel, Wen Meng, Xinquan Zhang, Zhao Lai +5 more

A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer

Cancer Research(2022)10.1158/0008-5472.can-22-0698

N/A

0DataRank · unranked

27 citations

Suryavathi Viswanadhapalli, Monica Mann, Dimple Chakravarty, Samaya Krishnan, Zexuan Liu +21 more

Integrin alpha 6 is upregulated and drives hepatocellular carcinoma progression through integrin α6β4 complex

International Journal of Cancer(2022)10.1002/ijc.34146

N/A

0DataRank · unranked

25 citations

Hakim Bouamar, Mátyás Cserháti, Carla Zeballos, Isha Mehta, Habil Zare +10 more

Single-cell RNA profiling identifies diverse cellular responses to EWSR1/FLI1 downregulation in Ewing sarcoma cells

Cellular Oncology(2022)10.1007/s13402-021-00640-x

N/A

0DataRank · unranked

23 citations

Fuyang Li, Yidong Chen, Myron S. Ignatius, Elizabeth R. Lawlor, Katsumi Kitagawa +4 more

Inhibition of LIFR Blocks Adiposity-Driven Endometrioid Endometrial Cancer Growth

Cancers(2022)10.3390/cancers14215400

N/A

0DataRank · unranked

9 citations

Uday P. Pratap, Xue Yang, Zexuan Liu, Kristin A. Altwegg, Bindu Santhamma +13 more

Targeting aberrant replication and DNA repair events for treating breast cancers

Communications Biology(2022)10.1038/s42003-022-03413-w

N/A

0DataRank · unranked

8 citations

Jun Hyoung Park, Panneerdoss Subbarayalu, Santosh Timilsina, Kaitlyn Bates, Pooja Yadav +20 more

SIRT1 inhibition‐induced senescence as a strategy to prevent prostate cancer progression

Molecular Carcinogenesis(2022)10.1002/mc.23412

N/A

0DataRank · unranked

11 citations

Paul Rivas, Xiaoyu Yang, Zhao Lai, Yidong Chen, Keri Schadler +5 more

Characterizing Macrophages Diversity in COVID-19 Patients Using Deep Learning

Genes(2022)10.3390/genes13122264

N/A

0DataRank · unranked

5 citations

Karla Paniagua, Wenjian Huang, Ricardo J. Ramirez, Leonardo Falcón, Andy Liu +4 more

Phase II Investigation of TVB-2640 (Denifanstat) with Bevacizumab in Patients with First Relapse High-Grade Astrocytoma

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-22-2807

N/A

0DataRank · unranked

122 citations

Adolfo Enrique Diaz Duque, Joel Michalek, Brandon Konkel, Laura Caflisch, Yidong Chen +5 more

Genomic profiling of subcutaneous patient-derived xenografts reveals immune constraints on tumor evolution in childhood solid cancer

Nature Communications(2023)10.1038/s41467-023-43373-1

N/A

0DataRank · unranked

14 citations

Abhik Bandyopadhyay, Laura J. Klesse, Anna Rogojina, Sang H. Chun, Erin Butler +23 more

Nitric oxide suppression by secreted frizzled-related protein 2 drives retinoblastoma

Cell Reports(2023)10.1016/j.celrep.2023.112103

N/A

0DataRank · unranked

9 citations

Fuchun Zhou, Xiuye Ma, Kathryn Bondra, Barron Blackman, Susan T. Weintraub +6 more

DepLink: an R Shiny app to systematically link genetic and pharmacologic dependencies of cancer

Bioinformatics Advances(2023)10.1093/bioadv/vbad076

N/A

0DataRank · unranked

10 citations

Li‐Ju Wang, Michael Ning, Gabriela Rubannelsonkumar, Eric Jin, Siyuan Zheng +5 more

Understanding painful versus non-painful dental pain in female and male patients: A transcriptomic analysis of human biopsies

PLoS ONE(2023)10.1371/journal.pone.0291724

N/A

0DataRank · unranked

7 citations

Michael Eskander, Phoebe Fang-Mei Chang, Brett Chapa, Shivani Ruparel, Zhao Lai +4 more

PELP1 inhibition by SMIP34 reduces endometrial cancer progression via attenuation of ribosomal biogenesis

Molecular Oncology(2023)10.1002/1878-0261.13539

N/A

0DataRank · unranked

5 citations

Zexuan Liu, Weiwei Tang, Uday P. Pratap, Alexia B. Collier, Kristin A. Altwegg +12 more

Effects of vortioxetine on hippocampal-related cognitive impairment induced in rats by androgen deprivation as a model of prostate cancer treatment

Translational Psychiatry(2023)10.1038/s41398-023-02600-5

N/A

0DataRank · unranked

5 citations

Yidong Chen, Jonathan Gelfond, Teresa L. Johnson‐Pais, Robin J. Leach, Chethan Ramamurthy +3 more

Spatial-Live: A lightweight and versatile tool for single cell spatial-omics data visualization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.24.559173

N/A

0DataRank · unranked

2 citations

Zhao Lai, Siyuan Zheng, Yidong Chen, Zhenqing Ye

Understanding Painful versus Non-Painful Dental Pain in Male and Female Patients: A Transcriptomic Analysis of Human Biopsies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525783

N/A

0DataRank · unranked

0 citations

Michael Eskander, Fang-Mei Chang, Brett Chapa, Ruparel Shivani, Zhao Lai +4 more

Data from M6A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

(2023)10.1158/0008-5472.c.6513931.v1

N/A

0DataRank · unranked

0 citations

Panneerdoss Subbarayalu, Daisy Medina, Saif Nirzhor, Santosh Timilsina, Subapriya Rajamanickam +12 more

Supplementary Table from A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22432374.v1

Top 100%

0DataRank

Top 100%0 citations

Suryavathi Viswanadhapalli, Monica Mann, Dimple Chakravarty, Samaya Krishnan, Zexuan Liu +21 more

Data from Vertical Inhibition of the RAF–MEK–ERK Cascade Induces Myogenic Differentiation, Apoptosis, and Tumor Regression in H/NRASQ61X Mutant Rhabdomyosarcoma

(2023)10.1158/1535-7163.c.6543340.v1

N/A

0DataRank · unranked

0 citations

Vanessa Del Pozo, Marielle E. Yohe, Craig M. Goodwin, Terry J. Shackleford, Long Wang +11 more

Data from Vertical Inhibition of the RAF–MEK–ERK Cascade Induces Myogenic Differentiation, Apoptosis, and Tumor Regression in H/NRASQ61X Mutant Rhabdomyosarcoma

(2023)10.1158/1535-7163.c.6543340

N/A

0DataRank · unranked

0 citations

Vanessa Del Pozo, Marielle E. Yohe, Craig M. Goodwin, Terry J. Shackleford, Long Wang +11 more

Pharmacological inhibition of the LIF/LIFR autocrine loop reveals vulnerability of ovarian cancer cells to ferroptosis

npj Precision Oncology(2024)10.1038/s41698-024-00612-y

N/A

0DataRank · unranked

20 citations

Suryavathi Viswanadhapalli, Uday P. Pratap, Gopalam Rahul, Xue Yang, Prabhakar Pitta Venkata +19 more

Targeting S6K/NFκB/SQSTM1/Polθ signaling to suppress radiation resistance in prostate cancer

Cancer Letters(2024)10.1016/j.canlet.2024.217063

N/A

0DataRank · unranked

15 citations

Michelle Villarreal, Shih‐Bo Huang, Sridharan Jayamohan, Paul Rivas, Suleman S. Hussain +19 more

STEAP2 promotes hepatocellular carcinoma progression via increased copper levels and stress-activated MAP kinase activity

Scientific Reports(2024)10.1038/s41598-024-63368-2

N/A

0DataRank · unranked

10 citations

Acarizia Easley, Hakim Bouamar, Guixi Zheng, Xiang Gu, Junhua Yang +6 more

Synergistic Antitumor Activity of Talazoparib and Temozolomide in Malignant Rhabdoid Tumors

Cancers(2024)10.3390/cancers16112041

N/A

0DataRank · unranked

5 citations

Sebastian Molinas, Vanessa Del Pozo, Abhik Bandyopadhyay, Zhao Lai, Dias Kurmashev +5 more

Multimodal Identification of Molecular Factors Linked to Severe Diabetic Foot Ulcers Using Artificial Intelligence

International Journal of Molecular Sciences(2024)10.3390/ijms251910686

N/A

0DataRank · unranked

5 citations

Yu-Fang Jin, Mahmoud ElHefnawi, Yidong Chen, Mario Flores, Anita Omo-Okhuasuyi

Significance of LIF/LIFR Signaling in the Progression of Obesity-Driven Triple-Negative Breast Cancer

Cancers(2024)10.3390/cancers16213630

N/A

0DataRank · unranked

4 citations

Jaitri Joshi, Alondra L. Rodriguez Sanchez, Uday P. Pratap, Rahul Gopalam, Yidong Chen +8 more

Predicting drug response through tumor deconvolution by cancer cell lines

Patterns(2024)10.1016/j.patter.2024.100949

N/A

0DataRank · unranked

8 citations

Yu‐Chiao Chiu, Tzu‐Pin Lu, Tzu‐Hung Hsiao, Yidong Chen, Yu-Ching Hsu

TGFβ and Hippo Signaling Pathways Coordinate to Promote Acinar to Ductal Metaplasia in Human Pancreas

Cells(2024)10.3390/cells13020186

N/A

0DataRank · unranked

6 citations

Yi Xu, Jun Liu, Xue Yin, Zhijie Liu, Zhengqing Ye +4 more

PELP1 Is a Novel Therapeutic Target in Hepatocellular Carcinoma

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0173

N/A

0DataRank · unranked

3 citations

Xue Yang, Adriana Baker, Rahul Gopalam, William C. Arnold, Timilehin T. Adeniran +10 more

A Metastatic Cancer Expression Generator (MetGen): A Generative Contrastive Learning Framework for Metastatic Cancer Generation

Cancers(2024)10.3390/cancers16091653

N/A

0DataRank · unranked

2 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Zhentao Liu

Metastatic Cancer Expression Generator (MetGen): A Generative Contrastive Learning Framework for Metastatic Cancer Generation

Preprints.org(2024)10.20944/preprints202404.0397.v1

N/A

0DataRank · unranked

1 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Zhentao Liu

Dissection of tumoral niches using spatial transcriptomics and deep learning

iScience(2025)10.1016/j.isci.2025.112214

N/A

0DataRank · unranked

5 citations

Yufang Jin, Yidong Chen, Shou‐Jiang Gao, Yufei Huang, Mario Flores +1 more

Dual inhibition of MAPK and TORC1 signaling retards development of radiation resistance in pediatric BRAF V600E glioma models

Neuro-Oncology(2025)10.1093/neuonc/noaf068

N/A

0DataRank · unranked

2 citations

Kathryn Bondra, Hanzhou Wang, Dias Kurmashev, Bipasha Mukherjee, Suman Kanji +6 more

Benchmarking mouse contamination removing protocols in patient-derived xenografts genomic profiling

npj Precision Oncology(2025)10.1038/s41698-025-00902-z

N/A

0DataRank · unranked

1 citations

Funan He, Anna Rogojina, Fuyang Li, Yi Zou, Jing Jiang +7 more

Transformer and graph variational autoencoder to identify microenvironments: A deep learning protocol for spatial transcriptomics

STAR Protocols(2025)10.1016/j.xpro.2025.104206

N/A

0DataRank · unranked

1 citations

Yufei Huang, Shou‐Jiang Gao, Yidong Chen, Yu-Fang Jin, Mario Flores +1 more

Classification of Cancer Types Using Graph Convolutional Neural Networks

Frontiers in Physics(2020)10.3389/fphy.2020.00203

N/A

0DataRank · unranked

142 citations

Yu‐Chiao Chiu, Allen Hererra, Milad Mostavi, Joshua Ramirez, Yidong Chen +3 more

Cell type prediction with neighborhood-enhanced cellular embedding using deep learning on hematoxylin and eosin-stained images

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.07.026

N/A

0DataRank · unranked

0 citations

Hanzhou Wang, Tapsya Nayak, Zhenqing Ye, Yu‐Chiao Chiu, Yu-Fang Jin +3 more

Convolutional neural network models for cancer type prediction based on gene expression

BMC Medical Genomics(2020)10.1186/s12920-020-0677-2

N/A

0DataRank · unranked

253 citations

Yu‐Chiao Chiu, Yufei Huang, Yidong Chen, Milad Mostavi

Predicting Sites of Epitranscriptome Modifications Using Unsupervised Representation Learning Based on Generative Adversarial Networks

Frontiers in Physics(2020)10.3389/fphy.2020.00196

N/A

0DataRank · unranked

16 citations

Milad Mostavi, Yu‐Chiao Chiu, Yidong Chen, Jianqiu Zhang, Yufei Huang +1 more

Inhibitory Interplay of SULT2B1b Sulfotransferase with AKR1C3 Aldo-keto Reductase in Prostate Cancer

Endocrinology(2020)10.1210/endocr/bqz042

N/A

0DataRank · unranked

10 citations

Chung-Seog Song, Chun-Lin Lin, Shoulei Jiang, Paweł A. Osmulski, Chiou-Miin Wang +8 more

GDF6-CD99 Signaling Regulates Src and Ewing Sarcoma Growth

Cell Reports(2020)10.1016/j.celrep.2020.108332

N/A

0DataRank · unranked

26 citations

David J. Elzi, Panneerselvam Jayabal, Xiuye Ma, Yu‐Chiao Chiu, Yidong Chen +5 more

Campylobacter infection promotes IFNγ-dependent intestinal pathology via ILC3 to ILC1 conversion

Mucosal Immunology(2020)10.1038/s41385-020-00353-8

N/A

0DataRank · unranked

26 citations

Anna А. Korchagina, Qingqing Xia, Sergey A. Shein, Xi Jing, Zhao Lai +9 more

Age-associated genes in human mammary gland drive human breast cancer progression

Breast Cancer Research(2020)10.1186/s13058-020-01299-2

N/A

0DataRank · unranked

25 citations

Bingzhi Wang, Haiyan Zhu, You Zhou, Aaron M. Horning, Tim H-M. Huang +6 more

Yidong Chen

Indexed papers

Top data-sharing exemplar

Papers