Manuel Kleiner

Environmental ScienceBiochemistry, Genetics and Molecular BiologyEarth and Planetary SciencesChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Considerations for constructing a protein sequence database for metaproteomics

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.01.018

Top 11%

1.9DataRank

Top 11%82 citations

Manuel Kleiner, J. Alfredo Blakeley‐Ruiz

Papers

Driven by 41 papers — median percentile 73. Top paper: “Considerations for constructing a protein sequence database for metaproteomics”.

Considerations for constructing a protein sequence database for metaproteomics

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.01.018

Top 11%

1.9DataRank

Top 11%82 citations

Manuel Kleiner, J. Alfredo Blakeley‐Ruiz

Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities

mSystems(2019)10.1128/msystems.00115-19

N/A

0.812DataRank · unranked

224 citations

Manuel Kleiner

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Nature Communications(2021)10.1038/s41467-021-27542-8

N/A

0.729DataRank · unranked

128 citations

Benoît J. Kunath, Kay Schallert, Stephanie Serena Schäpe, Paul E. Abraham, Jean Armengaud +40 more

Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities

Microbiome(2020)10.1186/s40168-020-00935-5

N/A

0.614DataRank · unranked

59 citations

Brian Bushnell, Kenneth E. Sanderson, Lora V. Hooper, Breck A. Duerkop, Manuel Kleiner

The microbiologist's guide to metaproteomics

iMeta(2025)10.1002/imt2.70031

N/A

0.593DataRank · unranked

51 citations

Jean Armengaud, Dirk Benndorf, J. Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng +27 more

Dietary protein source alters gut microbiota composition and function

The ISME Journal(2025)10.1093/ismejo/wraf048

N/A

0.557DataRank · unranked

40 citations

Alexandria Bartlett, Arthur S. McMillan, Ayesha Awan, Molly E. Vanhoy, Alissa K Meyerhoffer +6 more

Assessing species biomass contributions in microbial communities via metaproteomics

10.1101/130575

N/A

0.515DataRank · unranked

30 citations

Erin Thorson, Christine E. Sharp, Xiaoli Dong, Dan Liu, Carmen Li +2 more

A pilot study of metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans

Food & Function(2024)10.1039/d4fo02656j

Top 42%

0.455DataRank

Top 42%10 citations

Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine B. Tenekjian +4 more

Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

PROTEOMICS(2025)10.1002/pmic.202400187

N/A

0.434DataRank · unranked

17 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more

Adaptations in gut Bacteroidales facilitate stable co-existence with their lytic bacteriophages

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.17.624012

N/A

0.280DataRank · unranked

4 citations

Colin Buttimer, Jessie L. Maier, Ciara A. Tobin, Lorraine A. Draper, R. Paul Ross +4 more

Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies

PROTEOMICS(2025)10.1002/pmic.202400149

N/A

0.257DataRank · unranked

4 citations

J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner, Alexandria Bartlett

Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella

PLoS Pathogens(2024)10.1371/journal.ppat.1012301

N/A

0.165DataRank · unranked

2 citations

Craig Gin, Benjamin J. Callahan, Emma K. Sheriff, Breck A. Duerkop, Manuel Kleiner +1 more

Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.09.588275

N/A

0.165DataRank · unranked

2 citations

Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine B. Tenekjian +4 more

Microbial DNA on the move: sequencing based detection and analysis of transduced DNA in pure cultures and microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.15.908442

N/A

0.165DataRank · unranked

2 citations

Brian Bushnell, Kenneth E. Sanderson, Lora V. Hooper, Breck A. Duerkop, Manuel Kleiner

Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.07.570621

N/A

0.104DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner, Alexandria Bartlett

How thoughtful experimental design can empower biologists in the omics era

Nature Communications(2025)10.1038/s41467-025-62616-x

N/A

0DataRank · unranked

9 citations

Manuel Kleiner, Maggie R. Wagner

Dietary protein from different sources escapes host digestion and is differentially modified by gut microbiota

Food & Function(2025)10.1039/d5fo01132a

N/A

0DataRank · unranked

9 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner +1 more

Adaptations in gut Bacteroidales facilitate stable co-existence with their lytic bacteriophages

Gut Microbes(2025)10.1080/19490976.2025.2507775

N/A

0DataRank · unranked

8 citations

Colin Buttimer, Jessie L. Maier, Ciara A. Tobin, Lorraine A. Draper, R. Paul Ross +4 more

Metaproteomics-based stable isotope fingerprinting links intestinal bacteria to their carbon source and captures diet-induced substrate switching

The ISME Journal(2025)10.1093/ismejo/wraf127

N/A

0DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Manuel Kleiner, Angie L. Mordant

The Microbiologist’s Guide to Metaproteomics

ChemRxiv(2025)10.26434/chemrxiv-2025-rh2q9

N/A

0DataRank · unranked

4 citations

Jean Armengaud, Dirk Benndorf, J. Blakeley-Ruiz, Madita Brauer, Kai Cheng +24 more

Source of dietary protein alters the abundance of proteases, intestinal epithelial and immune proteins both directly and via interactions with the gut microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632171

N/A

0DataRank · unranked

2 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Amanda L. Ziegler, Manuel Kleiner +1 more

Comparative Performance of Scribe and Database Search Engines in Metaproteomic Profiling of a Ground-Truth Microbiome Dataset

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654320

N/A

0DataRank · unranked

0 citations

Subina Mehta, Reid Wagner, Wassim Gabriel, James E. Johnson, Katherine Do +7 more

Evaluation of Parallel Accumulation-Serial Fragmentation methods for metaproteomics using a model microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.13.670166

N/A

0DataRank · unranked

0 citations

Andrew T. Rajczewski, Katherine Do, Matthew Willets, Manuel Kleiner, Timothy J. Griffin +2 more

The Interaction Between Abiotic and Biotic Soil Factors Modulates Heterosis Expression in Maize

Phytobiomes Journal(2025)10.1094/pbiomes-04-25-0026-r

N/A

0DataRank · unranked

0 citations

Martel L. Ellis, Natalie E. Ford, R. L. HOSTETLER, Peter Balint‐Kurti, Manuel Kleiner +2 more

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

Journal of Proteomics(2025)10.1016/j.jprot.2025.105549

N/A

0DataRank · unranked

0 citations

Subina Mehta, Reid Wagner, Wassim Gabriel, James E. Johnson, Katherine Do +7 more

Assessing the diversity and functional profile of the “microbial proteome” in fermented foods

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.19.689333

N/A

0DataRank · unranked

0 citations

Ayesha Awan, Nicole Rideout, Manuel Kleiner, Laura Winkler

Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.25.586692

N/A

0DataRank · unranked

1 citations

Craig Gin, Benjamin Callahan, Emma K. Sheriff, Breck A. Duerkop, Manuel Kleiner +1 more

Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes

PLoS Pathogens(2021)10.1371/journal.ppat.1009245

N/A

0DataRank · unranked

99 citations

Robert L. Hettich, Manuel Kleiner, Fernanda Salvato

Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.05.433915

N/A

0DataRank · unranked

12 citations

Benoît J. Kunath, Kay Schallert, Stephanie Serena Schäpe, Paul E. Abraham, Jean Armengaud +40 more

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.29.437612

N/A

0DataRank · unranked

11 citations

Angela Kouris, Marlene Jensen, Grace D’Angelo, Yihua Liu, Abigail Korenek +6 more

Evaluation of sample preservation and storage methods for metaproteomics analysis of intestinal microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.20.453169

N/A

0DataRank · unranked

7 citations

Manuel Kleiner, Angie L. Mordant

Dietary protein and the intestinal microbiota: An understudied relationship

iScience(2022)10.1016/j.isci.2022.105313

N/A

0DataRank · unranked

118 citations

Manuel Kleiner, Alexandria Bartlett

De novo phytosterol synthesis in animals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.22.489198

N/A

0DataRank · unranked

3 citations

Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Sarah Fearn +5 more

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

Microbiome(2023)10.1186/s40168-022-01454-1

N/A

0DataRank · unranked

32 citations

Angela Kouris, Marlene Violette, Grace D’Angelo, Yihua Liu, Abigail Korenek +6 more

Re-engineering a lost trait: IPD3 , a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531368

N/A

0DataRank · unranked

4 citations

Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner +2 more

Enterococcal quorum-controlled protease alters phage infection

FEMS Microbes(2024)10.1093/femsmc/xtae022

N/A

0DataRank · unranked

7 citations

Fernanda Salvato, Shelby E. Andersen, Anushila Chatterjee, Manuel Kleiner, Breck A. Duerkop +1 more

IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss

Plant Molecular Biology(2024)10.1007/s11103-024-01422-3

N/A

0DataRank · unranked

5 citations

Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner +2 more

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613707

N/A

0DataRank · unranked

6 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more

Dietary protein from different sources escapes host digestion and is differentially modified by gut microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.26.600830

N/A

0DataRank · unranked

5 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner +1 more

Stable isotope fingerprinting can directly link intestinal microorganisms with their carbon source and captures diet-induced substrate switching in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627769

N/A

0DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Manuel Kleiner, Angie L. Mordant

The interaction between abiotic and biotic soil factors drive heterosis expression in maize

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.30.610574

N/A

0DataRank · unranked

0 citations

Martel L. Ellis, Natalie E. Ford, R. L. HOSTETLER, Peter Balint‐Kurti, Manuel Kleiner +2 more

Manuel Kleiner

Indexed papers

Top data-sharing exemplar

Papers