Michael R. Hoopmann

Also affiliated with Institute for Systems Biology, Niedersächsisches Landesgesundheitsamt, InSysBio (Russia)

ChemistryBiochemistry, Genetics and Molecular BiologyHealth ProfessionsEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “Structural surfaceomics reveals an AML-specific conformation of integrin β2 as a CAR T cellular therapy target”.

Structural surfaceomics reveals an AML-specific conformation of integrin β2 as a CAR T cellular therapy target

Nature Cancer(2023)10.1038/s43018-023-00652-6

N/A

0.553DataRank · unranked

39 citations

Gianina Wicaksono, Clinton Yu, Jarrett Adams, Michael R. Hoopmann, William C. Temple +31 more

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00670

N/A

0.442DataRank · unranked

18 citations

David Shteynberg, Alex Zelter, Michael Riffle, Andrew S. Lyon, David A. Agard +6 more

Integrating Genetics, Transcriptomics, and Proteomics in Lung Tissue to Investigate Chronic Obstructive Pulmonary Disease

American Journal of Respiratory Cell and Molecular Biology(2023)10.1165/rcmb.2022-0302oc

N/A

0.425DataRank · unranked

16 citations

Michael H. Cho, Jarrett D. Morrow, Peter J. Castaldi, Craig P. Hersh, Mukul K. Midha +5 more

Lung proteomic biomarkers associated with chronic obstructive pulmonary disease

medRxiv(2021)10.1101/2021.04.07.21255030

N/A

0.269DataRank · unranked

5 citations

Michael R. Hoopmann, Peter J. Castaldi, Kirsten A. Simonsen, Mukul K. Midha, Michael H. Cho +6 more

The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.510538

N/A

0.165DataRank · unranked

2 citations

Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K. Eng, William E. Fondrie, Charles E. Grant +7 more

Assessment of Reported Error Rates in Crosslinking Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.27.649519

N/A

0.165DataRank · unranked

2 citations

Lars Kolbowski, Swantje Lenz, James E. Bruce, Robert J. Chalkley, Michael R. Hoopmann +7 more

SPACEPro: A Software Tool for Analysis of Protein Sample Cleavage for Tandem Mass Spectrometry

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00928

N/A

0DataRank · unranked

5 citations

Luis Mendoza, Robert L. Moritz, Michael R. Hoopmann, Vidur Kailash

Plasmodium falciparum Calcium Dependent Protein Kinase 4 is critical for male gametogenesis and transmission to the mosquito vector

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.06.447280

N/A

0DataRank · unranked

0 citations

Meseret T. Haile, Michael R. Hoopmann, Linh T. Tran, Samantha A. Michaels, Seamus R. Morrone +8 more

The Trans-Proteomic Pipeline: Robust Mass Spectrometry-based Proteomics Data Analysis Suite

ChemRxiv(2022)10.26434/chemrxiv-2022-3c75n

N/A

0DataRank · unranked

6 citations

Luis Mendoza, David Shteynberg, Michael R. Hoopmann, Zhi Sun, Jimmy K. Eng +2 more

Structural surfaceomics reveals an AML-specific conformation of Integrin-β2 as a CAR-T therapy target

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.10.511511

N/A

0DataRank · unranked

2 citations

Gianina Wicaksono, Clinton Yu, Jarrett J. Adams, Michael R. Hoopmann, William C. Temple +23 more

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00648

N/A

0DataRank · unranked

10 citations

Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David Shteynberg, Ling-jie He +6 more

The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00615

N/A

0DataRank · unranked

20 citations

Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K. Eng, William E. Fondrie, Charles E. Grant +7 more

Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers

Communications Biology(2023)10.1038/s42003-023-05128-y

N/A

0DataRank · unranked

19 citations

Tomasz Wilmanski, Priyanka Baloni, Max Robinson, Gonzalo G. Garcia, Michael R. Hoopmann +21 more

Proteomic changes induced by longevity-promoting interventions in mice

GeroScience(2023)10.1007/s11357-023-00917-z

N/A

0DataRank · unranked

14 citations

Jack Wiedrick, Alicia Feryn, Michal Maes, Mukul K. Midha, David Baxter +13 more

Optimization of Instrument Parameters for Efficient Phosphopeptide Identification and Localization by Data-dependent Analysis Using Orbitrap Tribrid Mass Spectrometers

ChemRxiv(2023)10.26434/chemrxiv-2023-qklh1-v2

N/A

0DataRank · unranked

1 citations

Michael R. Hoopmann, David Shteynberg, Ulrike Kusebauch, Robert L. Moritz, Seamus R. Morrone

Optimization of Instrument Parameters for Efficient Phosphopeptide Identification and Localization by Data-dependent Analysis Using Orbitrap Tribrid Mass Spectrometers

ChemRxiv(2023)10.26434/chemrxiv-2023-qklh1

N/A

0DataRank · unranked

0 citations

Michael R. Hoopmann, David Shteynberg, Ulrike Kusebauch, Robert L. Moritz, Seamus R. Morrone

Detection and Quantification of Drug–Protein Adducts in Human Liver

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00663

N/A

0DataRank · unranked

8 citations

Michael Riffle, David Shteynberg, Guo Zhong, Ellen B. Riddle, Michael R. Hoopmann +6 more

Limelight: An Open, Web-Based Tool for Visualizing, Sharing, and Analyzing Mass Spectrometry Data from DDA Pipelines

Journal of Proteome Research(2025)10.1021/acs.jproteome.4c00968

N/A

0DataRank · unranked

3 citations

Alex Zelter, Daniel Jaschob, Michael R. Hoopmann, Danielle A. Faivre, Robert L. Moritz +4 more

Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00624

N/A

0DataRank · unranked

114 citations

Luis Mendoza, David Shteynberg, Michael R. Hoopmann, Zhi Sun, Jimmy K. Eng +2 more

DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics

Nature Communications(2020)10.1038/s41467-020-18901-y

N/A

0DataRank · unranked

45 citations

David Campbell, Charu Kapil, Ulrike Kusebauch, Michael R. Hoopmann, Samuel L. Bader +2 more

A druggable oxidative folding pathway in the endoplasmic reticulum of human malaria parasites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.13.093591

N/A

0DataRank · unranked

2 citations

Heather M. Kudyba, Alejandra Villegas, Michael R. Hoopmann, Rodrigo P. Baptista, Baylee Bruton +4 more

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

Current Biology(2021)10.1016/j.cub.2021.09.031

N/A

0DataRank · unranked

56 citations

Mohamed S. Sarhan, Kun D. Huang, Adrian Tett, Alexander Schoenafinger, Stefania Zingale +16 more

Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector

mBio(2021)10.1128/mbio.02575-21

N/A

0DataRank · unranked

48 citations

Meseret T. Haile, Michael R. Hoopmann, Linh T. Tran, Samantha A. Michaels, Seamus R. Morrone +8 more

A redox-active crosslinker reveals an essential and inhibitable oxidative folding network in the endoplasmic reticulum of malaria parasites

PLoS Pathogens(2021)10.1371/journal.ppat.1009293

N/A

0DataRank · unranked

16 citations

Heather M. Kudyba, Alejandra Villegas, Michael R. Hoopmann, Rodrigo P. Baptista, Baylee Bruton +4 more