Emma Lundberg

Also affiliated with Science for Life Laboratory, Chan Zuckerberg Initiative (United States), Bioengineering Center, KTH Royal Institute of Technology, Stanford University

Biochemistry, Genetics and Molecular BiologyChemistryMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.1Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

Papers

Driven by 38 papers — median percentile 71. Top paper: “A subcellular map of the human proteome”.

A subcellular map of the human proteome

Science(2017)10.1126/science.aal3321

N/A

13.1DataRank · unranked

2991 citations

Lovisa Åkesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal +38 more

Deep Visual Proteomics defines single-cell identity and heterogeneity

Nature Biotechnology(2022)10.1038/s41587-022-01302-5

N/A

10.4DataRank · unranked

555 citations

Fabian Coscia, András Kriston, Réka Hollandi, Ferenc Kovács, Andreas-David Brunner +16 more

Toward a Confocal Subcellular Atlas of the Human Proteome

Molecular & Cellular Proteomics(2008)10.1074/mcp.m700325-mcp200

N/A

5.6DataRank · unranked

160 citations

Emma Lundberg, Per Oksvold, Anna Stenius, Erland Lewin, Erik Björling +6 more

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

A high-stringency blueprint of the human proteome

Nature Communications(2020)10.1038/s41467-020-19045-9

Top 6%

3.9DataRank

Top 6%217 citations

Edouard C. Nice, Eric W. Deutsch, Lydie Lane, Gilbert S. Omenn, Stephen R. Pennington +41 more

A multi-scale map of cell structure fusing protein images and interactions

Nature(2021)10.1038/s41586-021-04115-9

Top 9%

2.3DataRank

Top 9%80 citations

Edward L. Huttlin, Casper Winsnes, Maya L. Gosztyla, Ludivine Wacheul, Marcus R. Kelly +23 more

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Cell(2024)10.1016/j.cell.2024.11.015

N/A

0.861DataRank · unranked

310 citations

Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed +37 more

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage

Nature Methods(2025)10.1038/s41592-024-02563-5

Top 25%

0.802DataRank

Top 25%33 citations

Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Sarah A. Teichmann +95 more

LifeTime and improving European healthcare through cell-based interceptive medicine

Nature(2020)10.1038/s41586-020-2715-9

N/A

0.747DataRank · unranked

144 citations

Geneviève Almouzni, Stanislaw A. Gorski, Stein Aerts, Ido Amit, Michela G. Bertero +178 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Multimodal cell maps as a foundation for structural and functional genomics

Nature(2025)10.1038/s41586-025-08878-3

Top 29%

0.697DataRank

Top 29%36 citations

Mengzhou Hu, Gege Qian, Kyung‐Mee Moon, Abantika Pal, Neelesh Soni +29 more

Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

Nature Communications(2023)10.1038/s41467-023-40291-0

Top 31%

0.628DataRank

Top 31%26 citations

Leah L. Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog +3 more

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

Nature Methods(2021)10.1038/s41592-021-01316-y

N/A

0.470DataRank · unranked

22 citations

Elizabeth K. Neumann, Andrea J. Radtke, Jeannie M. Camarillo, Rebecca T. Beuschel, Alexandre Albanese +19 more

A Perturbation Cell Atlas of Human Induced Pluripotent Stem Cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.03.621734

Top 42%

0.447DataRank

Top 42%8 citations

Yesh Doctor, Amir Dailamy, Antoine Forget, Yi-Hung Lee, Becky Chinn +18 more

Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.21.589311

Top 42%

0.442DataRank

Top 42%13 citations

Jillian Mohan, Leah V. Schaffer, Kirsten Obernier, Sadnan Al Manir, Christopher Churas +28 more

Mapping cell structure across scales by fusing protein images and interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.21.163709

Top 49%

0.365DataRank

Top 49%7 citations

Casper Winsnes, Edward L. Huttlin, Fan Zheng, Wei Ouyang, Jisoo Park +8 more

Enabling Global Image Data Sharing in the Life Sciences

arXiv (Cornell University)(2024)10.48550/arxiv.2401.13023

N/A

0.282DataRank · unranked

5 citations

Sreenivas Bhattiprolu, Boerner, Katy, Beth A. Cimini, Lucy Collinson, Jan Ellenberg +18 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Multiplexed Deep Visual Proteomics Unveils Spatial Heterogeneity and Rare Endocrine States in Human Adult Pancreatic Islets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.27.650857

N/A

0.241DataRank · unranked

4 citations

Nicolai Dorka, Marvin Thielert, Frida Björklund, Frederic Ballllosera Navarro, Anna Martinez Casals +7 more

ISG15-modification of the Arp2/3 complex restricts pathogen spread

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.27.522022

N/A

0DataRank · unranked

0 citations

Brittany M. Ripley, Wei Ouyang, Miranda Sturtz, Ellen M. Upton, Emma K. Luhmann +15 more

Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.05.522764

N/A

0DataRank · unranked

6 citations

Leah L. Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog +3 more

Uncovering molecular grammars of intrinsically disordered regions that organize nucleolar fibrillar centers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.05.515292

N/A

0DataRank · unranked

11 citations

Andrew Z. Lin, Kiersten M. Ruff, Mina Farag, Wei Ouyang, Michael D. Vahey +3 more

Xist ribonucleoproteins promote female sex-biased autoimmunity

Cell(2024)10.1016/j.cell.2023.12.037

N/A

0DataRank · unranked

216 citations

Yanding Zhao, Julia A. Belk, Yang Zhao, Kerriann M. Casey, Derek C. Chen +19 more

Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient

Cell(2024)10.1016/j.cell.2024.02.029

N/A

0DataRank · unranked

172 citations

Kiersten M. Ruff, Andrew Z. Lin, Avnika Pant, Mina Farag, Jared M. Lalmansingh +8 more

Bento: a toolkit for subcellular analysis of spatial transcriptomics data

Genome biology(2024)10.1186/s13059-024-03217-7

N/A

0DataRank · unranked

48 citations

Noorsher Ahmed, Nicole A. Lopez, Dylan C. Lam, Avery Pong, Alexander Monell +9 more

Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes

Annual Review of Biomedical Data Science(2024)10.1146/annurev-biodatasci-102423-113534

N/A

0DataRank · unranked

8 citations

Leah V. Schaffer, Ishan Gaur, Mayank Jain, Trey Ideker, Emma Lundberg +1 more

Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images

Research Square(2022)10.21203/rs.3.rs-1303463/v1

N/A

0DataRank · unranked

11 citations

Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth +10 more

Bento: A toolkit for subcellular analysis of spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.495510

N/A

0DataRank · unranked

27 citations

Noorsher Ahmed, Nicole Lopez, Dylan C. Lam, Alexander Monell, Colin Kern +8 more

New Views of Old Proteins: Clarifying the Enigmatic Proteome

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100254

N/A

0DataRank · unranked

36 citations

Thomas P. Conrads, Richard R. Drake, Amy E. Herr, Ravi Iyengar, Ryan T. Kelly +15 more

Early AI Lifecycle Co-Reasoning: Ethics Through Integrated and Diverse Team Science

The American Journal of Bioethics(2024)10.1080/15265161.2024.2377106

N/A

0DataRank · unranked

5 citations

Vardit Ravitsky, Jan N. Hansen, Emma Lundberg, Wade L. Schulz, Jean‐Christophe Bélisle‐Pipon +1 more

Flexible and robust cell type annotation for highly multiplexed tissue images

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612510

N/A

0DataRank · unranked

0 citations

Shiqiu Yu, Anna Martinez Casals, Anna Bäckström, Yuxin Lu, Cecilia Lindskog +4 more

The new era of quantitative cell imaging—challenges and opportunities

Molecular Cell(2022)10.1016/j.molcel.2021.12.024

N/A

0DataRank · unranked

55 citations

Anne E. Carpenter, Emma Lundberg, Anne L. Plant, Rick Horwitz, Neda Bagheri

Pycro-Manager: open-source software for customized and reproducible microscope control

Nature Methods(2021)10.1038/s41592-021-01087-6

N/A

0DataRank · unranked

124 citations

Nico Stuurman, Ivan E. Ivanov, Nicholas M. Anthony, Wei Ouyang, Bin Li +18 more

Flexible and robust cell-type annotation for highly multiplexed tissue images

Cell Systems(2025)10.1016/j.cels.2025.101374

N/A

0DataRank · unranked

2 citations

Shiqiu Yu, Anna Martinez Casals, Anna Bäckström, Yuxin Lu, Cecilia Lindskog +4 more

Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.04.652145

N/A

0DataRank · unranked

3 citations

Frederic Ballllosera Navarro, Anna Martinez Casals, Christophe Avenel, Carolina Wählby, Emma Lundberg +1 more

Cell shapes decode molecular phenotypes in image-based spatial proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.13.653868

N/A

0DataRank · unranked

2 citations

William D. Leineweber, Matheus P. Viana, Anthony J. Cesnik, Jan N. Hansen, Wei Ouyang +3 more

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

Nature Methods(2023)10.1038/s41592-023-01846-7

N/A

0DataRank · unranked

45 citations

Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette +33 more

OMAP-34: Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Esophagus with CODEX, v1.0

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm432.mdnq.649

Top 100%

0DataRank

Top 100%0 citations

Diana Mahdessian, Emma Lundberg, Jeffrey Reina

Emma Lundberg

Indexed papers

Top data-sharing exemplar

Papers