John E. Stone

Biochemistry, Genetics and Molecular BiologyComputer ScienceMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol”.

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

The International Journal of High Performance Computing Applications(2022)10.1177/10943420221128233

N/A

0.689DataRank · unranked

98 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.12.468428

N/A

0.505DataRank · unranked

28 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.390187

N/A

0DataRank · unranked

46 citations

Abigail C. Dommer, Zied Gaieb, Emília P. Barros, Terra Sztain, Surl-Hee Ahn +23 more

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.05.188367

N/A

0DataRank · unranked

0 citations

Tyler Reddy, John E. Stone, Jodi A. Hadden‐Perilla, Juan R. Perilla, Fabio González-Arias

Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.09.463779

N/A

0DataRank · unranked

6 citations

Defne Gorgun, Zongyi Li, Alexander Brace, Maxim Zvyagin, Heng Ma +29 more

ANARI: A 3-D Rendering API Standard

Computing in Science & Engineering(2022)10.1109/mcse.2022.3163151

N/A

0DataRank · unranked

7 citations

Kevin Griffin, Jefferson Amstutz, David E DeMarle, William R. Sherman, Johannes Günther +1 more

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action

The International Journal of High Performance Computing Applications(2022)10.1177/10943420221113513

N/A

0DataRank · unranked

6 citations

Defne Gorgun, Michael Salim, Zongyi Li, Alexander Brace, Maxim Zvyagin +29 more

VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00658

N/A

0DataRank · unranked

98 citations

John E. Stone, João V. Ribeiro, Jan Saam, Lydia Freddolino, Rafael C. Bernardi +2 more

Dynamics of chromosome organization in a minimal bacterial cell

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1214962

N/A

0DataRank · unranked

22 citations

Zane R. Thornburg, Troy A. Brier, Jan A. Stevens, Fabian Grünewald, John E. Stone +3 more

Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales

Parallel Computing(2020)10.1016/j.parco.2020.102698

N/A

0DataRank · unranked

16 citations

Stuart Levy, John E. Stone, AJ Christensen, Barry Isralewitz, Robert Patterson +6 more

Application Experiences on a GPU-Accelerated Arm-based HPC Testbed

PubMed(2023)10.1145/3581576.3581621

N/A

0DataRank · unranked

8 citations

William F. Godoy, Nick Hagerty, J. Austin Harris, Óscar Hernández, Bálint Joó +29 more

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

Computing in Science & Engineering(2020)10.1109/mcse.2020.3020508

N/A

0DataRank · unranked

14 citations

Tyler Reddy, John E. Stone, Jodi A. Hadden‐Perilla, Juan R. Perilla, Fabio González-Arias