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VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00658Source: DataRank Database

VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations is a research paper published in Journal of Chemical Information and Modeling (2023). On theSindex it has a DataRank of 0. It has been cited 98 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access98 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)Impact (FWCI 9.29)OA: greenTopics (37)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (7)

John E. Stone ORCID,João V. Ribeiro ORCID,Jan Saam,Lydia Freddolino ORCID,Rafael C. Bernardi ORCID

Live enrichment

PubMed:37506321 PMC:PMC10516160 OpenAlex:https://openalex.org/W4385334631

National Institute of General Medical Sciences

Grant: P41-GM104601

National Institute of General Medical Sciences

Grant: R24-GM145965

NIGMS NIH HHS

Grant: R24 GM145965

NIGMS NIH HHS

Grant: P41 GM104601

FWCI

9.29

Citation Percentile

1.0%

Citation Trend

2023

2024

2025

2026

greenLicense: https://doi.org/10.15223/policy-029

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC10516160/pdf/nihms-1932025.pdf

publisherhttps://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c00658

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/10516160

journalhttps://doi.org/10.1021/acs.jcim.3c00658

Fields of Study

Protein Structure and DynamicsAdvanced Fluorescence Microscopy TechniquesMicrofluidic and Capillary Electrophoresis ApplicationsQuantum TheoryMolecular Dynamics SimulationSoftwareChlamydomonas reinhardtiiModels, MolecularSARS-CoV-2Small Molecule Libraries

MeSH Terms

SARS-CoV-2Models, MolecularQuantum TheorySoftwareChlamydomonas reinhardtiiSmall Molecule LibrariesMolecular Dynamics Simulation

Keywords

VisualizationBiomoleculeComputer scienceForce field (fiction)NanotechnologySet (abstract data type)Field (mathematics)QM/MMQuantumMolecular dynamicsSoftwareMoleculeComputational scienceConstruct (python library)ChemistryComputational chemistryPhysicsMaterials scienceArtificial intelligenceQuantum mechanics

Sustainable Development Goals

SDG 0: Industry, innovation and infrastructure