🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alexandre M. J. J. Bonvin

University of Applied Sciences Utrecht

ORCID: 0000-0001-7369-1322

Also affiliated with Utrecht University, University Medical Center Utrecht

Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.3Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 17 papers — median percentile 70. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168540
N/A
1.3DataRank · unranked
42 citations

Matthew M. Copeland, Guillaume Brysbaert, Shoshana J. Wodak, Alexandre M. J. J. Bonvin, Petras J. Kundrotas +3 more

Altered Specificity in DNA Binding by the lac Repressor: A Mutant lac Headpiece that Mimics the gal Repressor

ChemBioChem(2005)10.1002/cbic.200500049
N/A
1.1DataRank · unranked
15 citations

Gert E. Folkers, Alexandre M. J. J. Bonvin, Devashish Das, Rolf Boelens, Robert Kaptein +1 more

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

PROTEOMICS(2023)10.1002/pmic.202200323
Top 25%
0.815DataRank
Top 25%26 citations

Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals +41 more

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546
Top 46%
0.395DataRank
Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

Updates to the CASP Infrastructure in 2024

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70042
Top 56%
0.286DataRank
Top 56%4 citations

Maciej Miłostan, Marc F. Lensink, Sameer Velankar, Alexandre M. J. J. Bonvin, John Moult +2 more

Characterization of nucleosome sediments for protein interactionstudies by solid-state NMR spectroscopy

(2021)10.5194/mr-2021-21
N/A
0.165DataRank · unranked
2 citations

ShengQi Xiang, Marco M. R. M. Hendrix, Yi Zhang, Markus Weingarth, Alexandre M. J. J. Bonvin +5 more

Characterization of nucleosome sediments for protein interaction studies by solid-state NMR spectroscopy

Magnetic Resonance(2021)10.5194/mr-2-187-2021
N/A
0DataRank · unranked
15 citations

ShengQi Xiang, Marco M. R. M. Hendrix, Yi Zhang, Gert E. Folkers, Markus Weingarth +6 more

Predicting binding events in very flexible, allosteric, multi-domain proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.02.597018
N/A
0DataRank · unranked
0 citations

Mohd Athar, Han Kurt, Christine Neville, Giuliano Malloci, Fabrizio C. Muredda +5 more

Toward the Prediction of Binding Events in Very Flexible, Allosteric, Multidomain Proteins

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.4c01810
N/A
0DataRank · unranked
9 citations

Mohd Athar, Han Kurt, Christine Neville, Giuliano Malloci, Fabrizio C. Muredda +5 more

MetaScore: A novel machine-learning based approach to improve traditional scoring functions for scoring protein-protein docking conformations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.06.463442
N/A
0DataRank · unranked
0 citations

Cunliang Geng, Alexandre M. J. J. Bonvin, Li C. Xue, Vasant Honavar, Yong Gyu Jung

iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines

SoftwareX(2020)10.1016/j.softx.2020.100462
N/A
0DataRank · unranked
9 citations

Yong Gyu Jung, Vasant Honavar, Cunliang Geng, Alexandre M. J. J. Bonvin, Li C. Xue +1 more

An antibiotic from an uncultured bacterium binds to an immutable target

Cell(2023)10.1016/j.cell.2023.07.038
N/A
0DataRank · unranked
137 citations

Aaron J. Peoples, Kevin C. Ludwig, Sourav Maity, Maik G. N. Derks, Stefania De Benedetti +25 more

PDB‐tools web: A user‐friendly interface for the manipulation of PDB files

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.26018
N/A
0DataRank · unranked
35 citations

João M. C. Teixeira, Mikaël Trellet, João Rodrigues, Alexandre M. J. J. Bonvin, Brian Jiménez‐García

A new antibiotic from an uncultured bacterium binds to an immutable target

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540765
N/A
0DataRank · unranked
6 citations

Aaron J. Peoples, Kevin C. Ludwig, Sourav Maity, Maik G. N. Derks, Stefania De Benedetti +20 more