Jason Fan

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Perplexity: evaluating transcript abundance estimation in the absence of ground truth”.

Perplexity: evaluating transcript abundance estimation in the absence of ground truth

Algorithms for Molecular Biology(2022)10.1186/s13015-022-00214-y

N/A

0DataRank · unranked

0 citations

Spencer Skylar Chan, Rob Patro, Jason Fan

Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing

Lecture notes in computer science(2023)10.1007/978-3-031-29119-7_2

N/A

0DataRank · unranked

16 citations

Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Fulgor: A fast and compact k -mer index for large-scale matching and color queries

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.09.539895

N/A

0DataRank · unranked

9 citations

Noor Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Meta-colored compacted de Bruijn graphs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.21.550101

N/A

0DataRank · unranked

2 citations

Jason Fan, Rob Patro, Giulio Ermanno Pibiri

Fulgor: a fast and compact k-mer index for large-scale matching and color queries

Algorithms for Molecular Biology(2024)10.1186/s13015-024-00251-9

N/A

0DataRank · unranked

39 citations

Jamshed Khan, Noor Singh, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Where the Patterns Are: Repetition-Aware Compression for Colored de Bruijn Graphs *

Journal of Computational Biology(2024)10.1089/cmb.2024.0714

N/A

0DataRank · unranked

12 citations

Giulio Ermanno Pibiri, Jason Fan, Rob Patro, Alessio Campanelli

Meta-colored Compacted de Bruijn Graphs

Lecture notes in computer science(2024)10.1007/978-1-0716-3989-4_9

N/A

0DataRank · unranked

7 citations

Jason Fan, Rob Patro, Giulio Ermanno Pibiri

Where the patterns are: repetition-aware compression for colored de Bruijn graphs ⋆

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.09.602727

N/A

0DataRank · unranked

0 citations

Giulio Ermanno Pibiri, Jason Fan, Rob Patro, Alessio Campanelli

Tree-based differential testing using inferential uncertainty for RNA-seq

Genome Research(2025)10.1101/gr.279981.124

N/A

0DataRank · unranked

1 citations

Euphy Wu, Jason Fan, Michael I. Love, Rob Patro, Noor Singh