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Where the patterns are: repetition-aware compression for colored de Bruijn graphs ⋆

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.09.602727Source: DataRank Database

Where the patterns are: repetition-aware compression for colored de Bruijn graphs ⋆ is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2024). On theSindex it has a DataRank of 0.

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)OA: greenTopics (22)IDs (PubMed, OpenAlex)

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Authors (4)

Giulio Ermanno Pibiri ORCID,Jason Fan ORCID,Rob Patro ORCID,Alessio Campanelli

Live enrichment

PubMed:39026859 OpenAlex:https://openalex.org/W4400625322

European Commission

Grant: 321482

Social Innovation on active and healthy ageing for sustainable economic growth

National Science Foundation

Grant: 1750472

CAREER: A Comprehensive and Lightweight Framework for Transcriptome Analysis

National Science Foundation

Grant: 1840340

Graduate Research Fellowship Program (GRFP)

European Commission

Grant: 101093026

Extreme Food Risk Analytics

National Science Foundation

Grant: 1763680

CSR: Medium: Approximate Membership Query Data Structures in Computational Biology and Storage

greenLicense: https://journals.sagepub.com/page/policies/text-and-data-mining-license

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2024/07/13/2024.07.09.602727.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2024.07.09.602727

repositoryhttps://doi.org/10.1101/2024.07.09.602727

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39026859

Fields of Study

Algorithms and Data CompressionGenomics and Phylogenetic StudiesGenome Rearrangement Algorithms

Keywords

De Bruijn sequenceColoredRepetition (rhetorical device)Computer scienceCompression (physics)MathematicsCombinatoricsSociologyPhysicsPhilosophyData compressionHashingComputational BiologyHumansColored de Bruijn graphSequence Analysis, DNAPseudoalignmentResearch ArticlesAlgorithms