Luke Zappia

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

22.3Author DataRank

Indexed papers

15in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 15 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Benchmarking atlas-level data integration in single-cell genomics

Nature Methods(2021)10.1038/s41592-021-01336-8

Top 3%

6.5DataRank

Top 3%1462 citations

Maren Büttner, Kridsadakorn Chaichoompu, M. F. Mueller, Fabian Joachim Theis, Anna Danese +7 more

Papers

Driven by 29 papers — median percentile 57. Top paper: “Benchmarking atlas-level data integration in single-cell genomics”.

Benchmarking atlas-level data integration in single-cell genomics

Nature Methods(2021)10.1038/s41592-021-01336-8

Top 3%

6.5DataRank

Top 3%1462 citations

Maren Büttner, Kridsadakorn Chaichoompu, M. F. Mueller, Fabian Joachim Theis, Anna Danese +7 more

Benchmarking atlas-level data integration in single-cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.111161

N/A

5.3DataRank · unranked

122 citations

Maren Büttner, Kridsadakorn Chaichoompu, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2

Top 4%

5.0DataRank

Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape

Genome Biology(2021)10.1186/s13059-021-02519-4

Top 5%

4.2DataRank

Top 5%200 citations

Fabian Joachim Theis, Luke Zappia

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747

Top 8%

2.8DataRank

Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Population-level integration of single-cell datasets enables multi-scale analysis across samples

Nature Methods(2023)10.1038/s41592-023-02035-2

N/A

2.0DataRank · unranked

108 citations

Soroor Hediyeh-zadeh, Amir Ali Moinfar, Marco Wagenstetter, Luke Zappia, Mohammad Lotfollahi +2 more

Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas

Nature Metabolism(2023)10.1038/s42255-023-00876-x

Top 13%

1.6DataRank

Top 13%85 citations

Aimée Bastidas-Ponce, Mostafa Bakhti, Luke Zappia, Maren Büttner, Ciro Salinno +6 more

Sfaira accelerates data and model reuse in single cell genomics

Genome Biology(2021)10.1186/s13059-021-02452-6

N/A

1.1DataRank · unranked

34 citations

Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos +5 more

Best practices for single-cell analysis across modalities

Nature Reviews Genetics(2023)10.1038/s41576-023-00586-w

N/A

1.0DataRank · unranked

1013 citations

Anna Christina Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia +34 more

Splatter: simulation of single-cell RNA sequencing data

Genome Biology(2017)10.1186/s13059-017-1305-0

N/A

1.0DataRank · unranked

824 citations

Belinda Phipson, Alicia Oshlack, Luke Zappia

Defining and benchmarking open problems in single-cell analysis

Nature Biotechnology(2025)10.1038/s41587-025-02694-w

N/A

0.937DataRank · unranked

29 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Nikolay S. Markov, Luke Zappia +48 more

Population-level integration of single-cell datasets enables multi-scale analysis across samples

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.517803

Top 22%

0.932DataRank

Top 22%27 citations

Soroor Hediyeh-zadeh, Marco Wagenstetter, Amir Ali Moinfar, Luke Zappia, Mohammad Lotfollahi +2 more

Optimal distance metrics for single-cell RNA-seq populations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.26.572833

N/A

0.908DataRank · unranked

19 citations

Tessa D. Green, Stefan Peidli, Mojtaba Bahrami, Meiqi Liu, Luke Zappia +4 more

Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.13.456196

Top 32%

0.622DataRank

Top 32%10 citations

Fabian Joachim Theis, Luke Zappia

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1

N/A

0.603DataRank · unranked

17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

Feature selection methods affect the performance of scRNA-seq data integration and querying

Nature Methods(2025)10.1038/s41592-025-02624-3

N/A

0.560DataRank · unranked

18 citations

Sabrina Richter, Ciro Ramírez-Suástegui, Raphael Kfuri-Rubens, Larsen Vornholz, Weixu Wang +5 more

Sfaira accelerates data and model reuse in single cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.419036

N/A

0.522DataRank · unranked

10 citations

Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Sophie Tritschler +4 more

Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.22.521557

Top 43%

0.432DataRank

Top 43%7 citations

Aimée Bastidas-Ponce, Mostafa Bakhti, Luke Zappia, Maren Büttner, Ciro Sallino +6 more

Integrating single-cell RNA-seq datasets with substantial batch effects

BMC Genomics(2025)10.1186/s12864-025-12126-3

N/A

0.294DataRank · unranked

5 citations

Amir Ali Moinfar, Luke Zappia, Shrey Parikh, Alejandro Tejada-Lapuerta, Benjamin J. Lengerich +3 more

Exploratory electronic health record analysis with ehrapy

medRxiv(2023)10.1101/2023.12.11.23299816

N/A

0.178DataRank · unranked

2 citations

Philipp Ehmele, Tim Treis, Julius Upmeier zu Belzen, Altana Namsaraeva, Nastassya Horlava +15 more

Deciphering brain organoid heterogeneity by identifying key quality determinants

Communications Biology(2025)10.1038/s42003-025-08855-6

N/A

0.165DataRank · unranked

2 citations

Elizaveta Gerasimova, Naime Zagha, Federica Furlanetto, Negar Nayebzade, Luke Zappia +15 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1

Top 71%

0.127DataRank

Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

Deciphering Brain Organoids Heterogeneity by Identifying Key Quality Determinants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.13.632763

N/A

0.104DataRank · unranked

1 citations

Naime Zagha, Tom Boerstler, Federica Furlanetto, Negar Nayebzade, Luke Zappia +14 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v7

Top 78%

0.104DataRank

Top 78%1 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v4

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v1

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v5

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune, lung, and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v3

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v2

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Luke Zappia

Indexed papers

Top data-sharing exemplar

Papers