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Sfaira accelerates data and model reuse in single cell genomics

Genome Biology(2021)10.1186/s13059-021-02452-6Source: DataRank Database

Sfaira accelerates data and model reuse in single cell genomics is a research paper published in Genome Biology (2021). On theSindex it has a DataRank of 1.1. It has been cited 34 times, with 18 citing works in its 1-hop citation network.

N/A

1.1DataRank · unranked

Scored on demand from live citation data

Open Access34 citations · 18 citing works in its network

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Linked data & code

doi

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (8 grants)Impact (FWCI 2.14)OA: goldTopics (59)Linked Datasets (6)DataCite Reuse (6)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 51%Citation Network 49%

Base Score Contribution

0.533

From this paper's citation signal

Citation Network Contribution

0.519

From 16 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 18 citers.

SimBu : bias-aware simulation of bulk RNA-seq data with variable cell-type composition
Bioinformatics202230 citations39 referencesContributes 0.088
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Nature Biotechnology2022618 citations84 referencesContributes 0.077
Single-Cell Analysis of the Pan-Cancer Immune Microenvironment and scTIME Portal
Cancer Immunology Research202172 citations60 referencesContributes 0.072
scPerturb: harmonized single-cell perturbation data
Nature Methods2024157 citations79 referencesContributes 0.064
An integrated single-cell atlas of the limb skeleton from development through adulthood
bioRxiv (Cold Spring Harbor Laboratory)202212 citations45 referencesContributes 0.057

Authors (10)

Leander Dony ORCID,Martin König,Abdul Moeed,Luke Zappia ORCID,Lukas Heumos ORCID

Live enrichment

PubMed:34433466 PMC:PMC8386039 OpenAlex:https://openalex.org/W3194078460

Deutsche Forschungsgemeinschaft

Grant: GSC 1006

Bundesministerium für Bildung und Forschung

Grant: 01IS18036B, 01IS18053A

Chan Zuckerberg Initiative

Grant: 2019-207271

Helmholtz Zentrum München

Grant: ZT-I-PF-5-01

Joachim Herz Stiftung

Grant: -

Deutsche Forschungsgemeinschaft

Grant: unidentified

unidentified

Deutsche Forschungsgemeinschaft

Grant: 194407719/GSC 1006

Graduate School of Quantitative Biosciences Munich (QBM)

Helmholtz Zentrum München - Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH)

FWCI

2.14

Citation Percentile

0.9%

Citation Trend

2021

2022

2023

2024

2025

goldLicense: cc-by

journalhttps://genomebiology.biomedcentral.com/track/pdf/10.1186/s13059-021-02452-6

publisherhttps://genomebiology.biomedcentral.com/track/pdf/10.1186/s13059-021-02452-6

publisherhttps://link.springer.com/content/pdf/10.1186/s13059-021-02452-6.pdf

publisherhttps://link.springer.com/article/10.1186/s13059-021-02452-6/fulltext.html

journalhttps://doi.org/10.1186/s13059-021-02452-6

Fields of Study

Single-cell and spatial transcriptomicsCancer Genomics and DiagnosticsCell Image Analysis Techniques0301 basic medicine0303 health sciences03 medical and health sciencesAnimalsDatabases, GeneticGene OntologyGenomicsHumansMiceMolecular Sequence AnnotationReproducibility of ResultsSingle-Cell AnalysisStatistics as Topic

MeSH Terms

AnimalsHumansStatistics as TopicReproducibility of ResultsGenomicsDatabases, GeneticMiceMolecular Sequence AnnotationSingle-Cell AnalysisGene Ontology

Keywords

MetadataExecutableGenomicsBiologyComputer scienceData typeReuseData modelingData miningComputational biologyInformation retrievalDatabaseGenomeWorld Wide WebGeneGeneticsSingle-cell GenomicsData ZooModel ZooQH301-705.5Data Zoo ; Model Zoo ; Single-cell GenomicsStatistics as TopicReproducibility of ResultsMolecular Sequence AnnotationQH426-470MiceGene OntologyDatabases, GeneticAnimalsHumansBiology (General)Single-Cell AnalysisSoftware

Additional file 1 of Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.16442079.v1figshare

Additional file 1 of Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.16442079figshare

Additional file 2 of Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.16442082.v1figshare

Additional file 2 of Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.16442082figshare

Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.c.5583165figshare

Sfaira accelerates data and model reuse in single cell genomics

10.6084/m9.figshare.c.5583165.v1figshare