Ali Pirani

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria”.

Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria

mSystems(2022)10.1128/msystems.00947-21

N/A

0.683DataRank · unranked

94 citations

Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez +7 more

Strain Variation in Clostridioides difficile Cytotoxicity Associated with Genomic Variation at Both Pathogenic and Nonpathogenic Loci

mSphere(2022)10.1128/msphere.00174-22

N/A

0.373DataRank · unranked

11 citations

Ali Pirani, D. Borden Lacy, Philip C. Hanna, Evan S. Snitkin, Katie Saund

Regional Spread of bla NDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Clinical Infectious Diseases(2021)10.1093/cid/ciab457

N/A

0DataRank · unranked

68 citations

Ryan Crawford, Arianna Miles-Jay, Ali Pirani, William E. Trick, Robert A. Weinstein +4 more

Replication Dynamics for Six Gram-Negative Bacterial Species during Bloodstream Infection

mBio(2021)10.1128/mbio.01114-21

N/A

0DataRank · unranked

29 citations

Aric N. Brown, Ali Pirani, Sara N. Smith, Amanda Photenhauer, Yuang Sun +4 more

Fitness barriers to spread of colistin resistance overcome by first establishing niche in patients with enhanced colistin exposure

medRxiv(2021)10.1101/2021.06.11.21258758

N/A

0DataRank · unranked

8 citations

Jennifer Han, Divya Choudhary, Stuart Castaneda, Ali Pirani, Kevin Alby +5 more

Strain variation in Clostridioides difficile toxin activity associated with genomic variation at both PaLoc and non-PaLoc loci

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.08.471880

N/A

0DataRank · unranked

4 citations

Ali Pirani, D. Borden Lacy, Philip C. Hanna, Evan S. Snitkin, Katie Saund

Ferric Citrate Uptake is a Virulence Factor in Uropathogenic Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.12.468464

N/A

0DataRank · unranked

3 citations

Anna Sintsova, Sara N. Smith, Ali Pirani, Evan S. Snitkin, Harry L. T. Mobley +1 more

Regional spread of bla NDM-1 -containing Klebsiella pneumoniae Sequence Type 147 in post-acute care facilities

medRxiv(2021)10.1101/2021.03.16.21253722

N/A

0DataRank · unranked

1 citations

Ryan Crawford, Arianna Miles-Jay, Ali Pirani, William E. Trick, Robert A. Weinstein +4 more

Ferric Citrate Uptake Is a Virulence Factor in Uropathogenic Escherichia coli

mBio(2022)10.1128/mbio.01035-22

N/A

0DataRank · unranked

52 citations

Anna Sintsova, Sara N. Smith, Ali Pirani, Evan S. Snitkin, Harry L. T. Mobley +1 more

Threshold-free genomic cluster detection to track transmission pathways in health-care settings: a genomic epidemiology analysis

The Lancet Microbe(2022)10.1016/s2666-5247(22)00115-x

N/A

0DataRank · unranked

21 citations

Rachel D Yelin, Karen Lolans, Ali Pirani, Robert A. Weinstein, Michael Y. Lin +3 more

Distinct Origins and Transmission Pathways of bla KPC Enterobacterales across Three U.S. States

Journal of Clinical Microbiology(2023)10.1128/jcm.00259-23

N/A

0DataRank · unranked

5 citations

Rany Octaria, Sean M. O’Malley, Tu N. Nguyen, Hannah Wolford, Ryan Crawford +22 more

Single cell spatial profiling of the matrisome identifies region-specific adhesion and signaling networks in glioblastoma

Communications Biology(2025)10.1038/s42003-025-09270-7

N/A

0DataRank · unranked

3 citations

Santiago A. Forero, Ali Pirani, John E. Morales, Marisol De La Fuente-Granada, S. Sebastian +7 more

Antibiotic-resistance plasmid amplified among MRSA cases in an urban jail and its connected communities

Nature Communications(2025)10.1038/s41467-025-67113-9

N/A

0DataRank · unranked

2 citations

Hannah Steinberg, Emily Benedict, Sarah E. Sansom, Alla Aroutcheva, Kyle J. Gontjes +9 more

Integrative single cell RNA and spatial profiling identify mechanisms of neonatal brain hemorrhage pathophysiology and repair

Angiogenesis(2025)10.1007/s10456-025-10019-3

N/A

0DataRank · unranked

2 citations

Zhihua Chen, Ali Pirani, Arpan De, Zachary Wise, Xiaofeng Zheng +3 more

prewas: data pre-processing for more informative bacterial GWAS

Microbial Genomics(2020)10.1099/mgen.0.000368

N/A

0DataRank · unranked

28 citations

Zena Lapp, Stephanie N. Thiede, Ali Pirani, Evan S. Snitkin, Katie Saund

Antibiotic-resistance plasmid amplified among MRSA cases in an urban jail and its connected communities

medRxiv(2025)10.1101/2025.10.23.25338646

N/A

0DataRank · unranked

0 citations

Hannah Steinberg, Emily Benedict, Sarah E. Sansom, Alla Aroutcheva, Kyle J. Gontjes +9 more

Application of Combined Genomic and Transfer Analyses to Identify Factors Mediating Regional Spread of Antibiotic-resistant Bacterial Lineages

Clinical Infectious Diseases(2020)10.1093/cid/ciaa364

N/A

0DataRank · unranked

12 citations

Betsy Foxman, Ali Pirani, Zena Lapp, Lona Mody, Evan S. Snitkin +1 more