🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

John J. Ferrie

Advanced Center for Orthopedics

ORCID: 0000-0001-7934-7266

Also affiliated with Sentar (United States)

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening”.

Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening

Chemical Science(2020)10.1039/d0sc02159h

N/A

0.612DataRank · unranked

58 citations

Zsofia Lengyel‐Zhand, Bieneke Janssen, Marshall G. Lougee, Sam Giannakoulias, Chia‐Ju Hsieh +8 more

Synthesis and characterization of high affinity fluorogenic α-synuclein probes

Chemical Communications(2020)10.1039/c9cc09849f

N/A

0DataRank · unranked

37 citations

John J. Ferrie, Bieneke Janssen, Chia‐Ju Hsieh, Thomas J. A. Graham, Kui-ying Xu +6 more

A Unified De Novo Approach for Predicting the Structures of Ordered and Disordered Proteins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.30.925636

N/A

0DataRank · unranked

1 citations

E. James Petersson, John J. Ferrie

The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer–promoter communication

Genes & Development(2021)10.1101/gad.349160.121

N/A

0DataRank · unranked

168 citations

John J. Ferrie, Robert Tjian, Xavier Darzacq, Jonathan P. Karr

“Structure”-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation

Molecular Cell(2022)10.1016/j.molcel.2022.09.021

N/A

0DataRank · unranked

150 citations

Jonathan P. Karr, Robert Tjian, Xavier Darzacq, John J. Ferrie

Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA)

eLife(2022)10.7554/elife.76870

N/A

0DataRank · unranked

41 citations

John J. Ferrie, Gina M. Dailey, Robert Tjian, Xavier Darzacq, Thomas G.W. Graham

p300 is an obligate integrator of combinatorial transcription factor inputs

Molecular Cell(2023)10.1016/j.molcel.2023.12.004

N/A

0DataRank · unranked

53 citations

Jonathan P. Karr, Thomas G.W. Graham, Gina M. Dailey, Gloria Zhang, Robert Tjian +2 more

Identification of a Putative α-synuclein Radioligand Using an in silico Similarity Search

Molecular Imaging and Biology(2023)10.1007/s11307-023-01814-9

N/A

0DataRank · unranked

17 citations

Guilong Tian, Zsofia Lengyel‐Zhand, Chia‐Ju Hsieh, Marshall G. Lougee, Aladdin Riad +13 more

p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.541220

N/A

0DataRank · unranked

3 citations

Jonathan P. Karr, Thomas G.W. Graham, Gina M. Dailey, Gloria Zhang, Robert Tjian +2 more

Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation

International Journal of Molecular Sciences(2025)10.3390/ijms26157125

N/A

0DataRank · unranked

2 citations

Ryann M. Perez, John J. Ferrie, E. James Petersson, Sam Giannakoulias, X.D. Li