Paul G. Thomas

Also affiliated with Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa, Infectious Disease Research Institute, Children's Research Hospital

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Supplementary Data from Common Trajectories of Highly Effective CD19-Specific CAR T Cells Identified by Endogenous T-cell Receptor Lineages

Figshare(2023)10.1158/2159-8290.22541069.v1

Top 100%

0DataRank

Top 100%0 citations

Hyunjin Kim, Ching‐Heng Chou, Deanna Langfitt, Robert C. Mettelman, Anastasia A. Minervina +17 more

Papers

Driven by 120 papers — median percentile 0. Top paper: “Mutational Landscape and Patterns of Clonal Evolution in Relapsed Pediatric Acute Lymphoblastic Leukemia”.

Mutational Landscape and Patterns of Clonal Evolution in Relapsed Pediatric Acute Lymphoblastic Leukemia

Blood Cancer Discovery(2020)10.1158/0008-5472.bcd-19-0041

N/A

3.9DataRank · unranked

152 citations

Zhaohui Gu, Stephanie M. Dobson, Željko Antić, Jeremy Chase Crawford, Xiaotu Ma +38 more

Targeted Immunosuppression Distinguishes COVID-19 from Influenza in Moderate and Severe Disease

medRxiv(2020)10.1101/2020.05.28.20115667

N/A

2.6DataRank · unranked

37 citations

Jeremy Chase Crawford, Jackson S. Turner, Aisha Souquette, Daniel Reynolds, Diane Bender +14 more

Latent human herpesvirus 6 is reactivated in CAR T cells

Nature(2023)10.1038/s41586-023-06704-2

N/A

1.6DataRank · unranked

53 citations

Yajie Yin, Katie Maurer, Katalin Sandor, Bence Dániel, Garima Yagnik +35 more

Characterizing Emerging Canine H3 Influenza Viruses

PLoS Pathogens(2020)10.1371/journal.ppat.1008409

N/A

0.998DataRank · unranked

46 citations

Pilar Blanco-Lobo, Laura Rodríguez, Theresa Fitzgerald, Hanyuan Zhang, Phuong Nguyen‐Contant +79 more

Influenza virus and SARS-CoV-2: pathogenesis and host responses in the respiratory tract

Nature Reviews Microbiology(2021)10.1038/s41579-021-00542-7

N/A

0.902DataRank · unranked

407 citations

David F. Boyd, Victoria Meliopoulos, Paul G. Thomas, Stacey Schultz‐Cherry, Tim Flerlage

SARS-CoV-2 mRNA vaccination elicits a robust and persistent T follicular helper cell response in humans

Cell(2021)10.1016/j.cell.2021.12.026

N/A

0.860DataRank · unranked

308 citations

Anastasia A. Minervina, Mikhail V. Pogorelyy, Jackson S. Turner, Wooseob Kim, Elizaveta Kalaidina +56 more

Tumor-intrinsic and -extrinsic determinants of response to blinatumomab in adults with B-ALL

Blood(2020)10.1182/blood.2020006287

N/A

0.774DataRank · unranked

173 citations

Ibrahim Aldoss, Chunxu Qu, Jeremy Chase Crawford, Zhaohui Gu, E. Kaitlynn Allen +14 more

Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier

Nature Communications(2020)10.1038/s41467-020-15999-y

N/A

0.668DataRank · unranked

85 citations

David F. Boyd, Jeremy Chase Crawford, Bridgett Sharp, Brandi Livingston, Hannah M. Rowe +9 more

Engineering naturally occurring CD7− T cells for the immunotherapy of hematological malignancies

Blood(2022)10.1182/blood.2021015020

N/A

0.633DataRank · unranked

67 citations

Jaquelyn T. Zoine, Jeremy Chase Crawford, Abishek Vaidya, Stefan Schattgen, Jacquelyn Myers +15 more

SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity

Nature Communications(2022)10.1038/s41467-022-30088-y

N/A

0.546DataRank · unranked

37 citations

Brendon Y. Chua, Kevin J. Selva, Łukasz Kedzierski, Thomas M. Ashhurst, Ebene R. Haycroft +46 more

CD4+ T cells exhibit distinct transcriptional phenotypes in the lymph nodes and blood following mRNA vaccination in humans

Nature Immunology(2024)10.1038/s41590-024-01888-9

N/A

0.538DataRank · unranked

35 citations

Wooseob Kim, Michael Quinn, Fangjie Han, Julian Q. Zhou, Alexandria J. Sturtz +17 more

CAR T-cell Design-dependent Remodeling of the Brain Tumor Immune Microenvironment Modulates Tumor-associated Macrophages and Anti-glioma Activity

Cancer Research Communications(2023)10.1158/2767-9764.crc-23-0424

N/A

0.489DataRank · unranked

25 citations

Jorge Ibañez-Vega, Jeremy Chase Crawford, Ching‐Heng Chou, Clifford S. Guy, Michaela Meehl +12 more

Transcriptomic profiles of multiple organ dysfunction syndrome phenotypes in pediatric critical influenza

Frontiers in Immunology(2023)10.3389/fimmu.2023.1220028

N/A

0.416DataRank · unranked

15 citations

Jeremy Chase Crawford, Georg Hahn, Mark W. Hall, Simone A. Thair, Margaret M. Newhams +24 more

Overlapping Peptides Elicit Distinct CD8+ T Cell Responses following Influenza A Virus Infection

The Journal of Immunology(2020)10.4049/jimmunol.2000689

N/A

0.360DataRank · unranked

10 citations

Jing Guan, Ting Wu, Carine Farenc, Xavier Y.X. Sng, Pirooz Zareie +10 more

Learning predictive signatures of HLA type from T-cell repertoires

10.1101/2024.01.25.577228

N/A

0.345DataRank · unranked

9 citations

Mikhail V. Pogorelyy, Anastasia A. Minervina, Paul G. Thomas, Aleksandra M. Walczak, Thierry Mora +1 more

NIAID workshop on T cell technologies

Nature Immunology(2023)10.1038/s41590-022-01377-x

N/A

0.312DataRank · unranked

7 citations

Chao Jiang, Mandy L. Ford, David M. Koelle, Alessandro Sette, Alex K. Shalek +2 more

A therapeutic peptide vaccine for fibrolamellar hepatocellular carcinoma: a phase 1 trial

Nature Medicine(2025)10.1038/s41591-025-03995-y

N/A

0.302DataRank · unranked

6 citations

Allison M. Kirk, Brian H. Ladle, Zeal Kamdar, Kayla J. Bendinelli, Won Jin Ho +23 more

Integrated Drivers of Basal and Acute Immunity in Diverse Human Populations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.25.534227

N/A

0.269DataRank · unranked

5 citations

E. Kaitlynn Allen, Christine M. Oshansky, Li Tang, Sook‐San Wong, Trushar Jeevan +18 more

Indoleamine 2,3-dioxygenase 1 regulates cell permissivity to astrovirus infection

Mucosal Immunology(2023)10.1016/j.mucimm.2023.05.011

N/A

0.241DataRank · unranked

4 citations

Brandi Livingston, Bridgett Sharp, Virginia Hargest, James B. Papizan, Natalie Pedicino +11 more

HLA-B*15:01-positive severe COVID-19 patients lack CD8 + T cell pools with highly expanded public clonotypes

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2503145122

N/A

0.208DataRank · unranked

3 citations

Lilith F. Allen, Ruth R. Hagen, Hayley A. McQuilten, Ahmed Abdul Quadeer, Priyanka Chaurasia +55 more

Inflammatory, transcriptomic, and cell fate responses underlying the mammalian transmission of avian influenza viruses

Journal of Virology(2025)10.1128/jvi.00647-25

N/A

0.184DataRank · unranked

2 citations

Timothy Flerlage, Sook‐San Wong, Peter Vogel, Kristine Piza, Patrick Schreiner +9 more

A small molecule RIG-I agonist serves to adjuvant broad multifaceted influenza virus vaccine immunity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508779

N/A

0.165DataRank · unranked

2 citations

Megan Knoll, Courtney Wilkins, Caroline Subra, Richard Green, Adolfo Garcı́a-Sastre +6 more

Viral immunity: Basic mechanisms and therapeutic applications—a Keystone Symposia report

Annals of the New York Academy of Sciences(2023)10.1111/nyas.14960

N/A

0.104DataRank · unranked

1 citations

Siddharth Balachandran, Lisa P. Daley‐Bauer, Arjun Rustagi, Ferrin Antony, Justin J. Frere +22 more

Resolving SARS-CoV-2 CD4+ T cell specificity via reverse epitope discovery

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100697

N/A

0DataRank · unranked

56 citations

Elisa Rosati, Anastasia A. Minervina, Robert C. Mettelman, Alexander Scheffold, André Franke +3 more

Murine fetal bone marrow does not support functional hematopoietic stem and progenitor cells until birth

Nature Communications(2022)10.1038/s41467-022-33092-4

N/A

0DataRank · unranked

45 citations

Hyun‐Jin Kim, Mahmoud Dabbah, Jacquelyn Myers, Jeremy Chase Crawford, Antonio Morales‐Hernández +8 more

SARS-CoV-2 Transmission Dynamics in Households With Children, Los Angeles, California

Frontiers in Pediatrics(2022)10.3389/fped.2021.752993

N/A

0DataRank · unranked

27 citations

Carolyn Jennifer Marentes Ruiz, Sanchi Malhotra, Lauren Turner, Ariana Peralta, Yesun Lee +9 more

Preventing packaging of translatable P5-associated DNA contaminants in recombinant AAV vector preps

Molecular Therapy — Methods & Clinical Development(2022)10.1016/j.omtm.2022.01.008

N/A

0DataRank · unranked

25 citations

Pei-Hsin Cheng, Stephen M. Winston, Isaiah L. Reeves, Aisha Souquette, Yunyu Spence +9 more

DDX58 Is Associated With Susceptibility to Severe Influenza Virus Infection in Children and Adolescents

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac350

N/A

0DataRank · unranked

14 citations

Yu Zhang, Margaret M. Newhams, Tanya Novak, Paul G. Thomas, Peter M. Mourani +26 more

PTEN directs developmental and metabolic signaling for innate-like T cell fate and tissue homeostasis

Nature Cell Biology(2022)10.1038/s41556-022-01011-w

N/A

0DataRank · unranked

14 citations

Nicole M. Chapman, Jana Raynor, Chengxian Xu, Wei Su, Anil KC +15 more

Comparing T cell receptor repertoires using optimal transport

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010681

N/A

0DataRank · unranked

9 citations

Stefan Schattgen, Paul G. Thomas, Philip Bradley, Frederick A. Matsen, Branden J Olson

Associations between exercise capacity, p16INK4a expression and inflammation among adult survivors of childhood cancer

Frontiers in Oncology(2022)10.3389/fonc.2022.1014661

N/A

0DataRank · unranked

8 citations

Matthew D. Wogksch, Mondira Kundu, Matthew Lear, Paul G. Thomas, Deo Kumar Srivastava +6 more

Twelve-Month Longitudinal Serology in SARS-CoV-2 Naïve and Experienced Vaccine Recipients and Unvaccinated COVID-19-Infected Individuals

Vaccines(2022)10.3390/vaccines10050813

N/A

0DataRank · unranked

9 citations

Wesley A. Cheng, Yesun Lee, Stephanie Perez, Lauren Turner, Carolyn Jennifer Marentes Ruiz +10 more

An adaptive, asymptomatic SARS-CoV-2 workforce screening program providing real-time, actionable monitoring of the COVID-19 pandemic

PLoS ONE(2022)10.1371/journal.pone.0268237

N/A

0DataRank · unranked

4 citations

James M. Hoffman, Li Tang, Stacey Schultz‐Cherry, Paul G. Thomas, Hana Hakim +5 more

Peptide Centric Vβ Specific Germline Contacts Shape a Specialist T Cell Response

Frontiers in Immunology(2022)10.3389/fimmu.2022.847092

N/A

0DataRank · unranked

2 citations

Alexandra Tsitsiklis, Stephanie Devoe, Wei Gao, Hunghao Chu, Yan Zhang +9 more

Microbiome Shapes the T Cell Receptor Repertoire among CD4+CD8+ Thymocytes

Biomedicines(2022)10.3390/biomedicines10123015

N/A

0DataRank · unranked

1 citations

Jeremy Chase Crawford, Pradyot Dash, Susan L. Tonkonogy, Paul G. Thomas, Julia L. Hurwitz +1 more

Protein Kinase C Delta Regulates Mononuclear Phagocytes and Hinders Response to Immunotherapy in Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.31.486620

N/A

0DataRank · unranked

1 citations

Jeremiah Holt, Laura M. Sipe, Margaret S. Bohm, Sydney J. Clarice, Johnathan R. Yarbro +7 more

Improved metabolic syndrome and timing of weight loss is crucial for influenza vaccine-induced immunity in obese mice

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.16.488487

N/A

0DataRank · unranked

1 citations

Ana Vazquez-Pagan, Brandi Livingston, Sean Cherry, Virginia Hargest, Bridgett Sharp +5 more

Robust and prototypical immune responses towards COVID-19 BNT162b2 vaccines in Indigenous people

The Journal of Immunology(2022)10.4049/jimmunol.208.supp.65.13

N/A

0DataRank · unranked

1 citations

Łukasz Kedzierski, Brendon Y. Chua, Adam K. Wheatley, Louise C. Rowntree, Lilith F. Allen +13 more

Single Cell Analysis Identifies Distinct Profiles in Pediatric Acute Respiratory Distress Syndrome

Research Square(2022)10.21203/rs.3.rs-1992367/v1

N/A

0DataRank · unranked

0 citations

Jeremy Chase Crawford, E. Kaitlynn Allen, Danielle Severns, Shaoyuan Tan, Sherri L. Surman +6 more

Pulmonary inflammation and fibroblast immunoregulation: from bench to bedside

Journal of Clinical Investigation(2023)10.1172/jci170499

N/A

0DataRank · unranked

79 citations

David F. Boyd, Tim Flerlage, Paul G. Thomas, Mohamed A. Ghonim

Baseline innate and T cell populations are correlates of protection against symptomatic influenza virus infection independent of serology

Nature Immunology(2023)10.1038/s41590-023-01590-2

N/A

0DataRank · unranked

64 citations

Aisha Souquette, Lee-Ann Van de Velde, Kasi Vegesana, E. Kaitlynn Allen, Christina Kackos +23 more

Robust and prototypical immune responses toward COVID-19 vaccine in First Nations peoples are impacted by comorbidities

Nature Immunology(2023)10.1038/s41590-023-01508-y

N/A

0DataRank · unranked

33 citations

Łukasz Kedzierski, Brendon Y. Chua, Mark Mayo, Claire Lonzi, Vanessa Rigas +41 more

A Small Molecule RIG-I Agonist Serves as an Adjuvant to Induce Broad Multifaceted Influenza Virus Vaccine Immunity

The Journal of Immunology(2023)10.4049/jimmunol.2300026

N/A

0DataRank · unranked

19 citations

Megan Knoll, Courtney Wilkins, Caroline Subra, Richard Green, Adolfo Garcı́a-Sastre +6 more

Robust SARS-CoV-2 T cell responses with common TCRαβ motifs toward COVID-19 vaccines in patients with hematological malignancy impacting B cells

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101017

N/A

0DataRank · unranked

23 citations

Louise C. Rowntree, Lilith F. Allen, Brendon Y. Chua, Łukasz Kedzierski, Chhay Lim +50 more

Single cell transcriptomics identifies distinct profiles in pediatric acute respiratory distress syndrome

Nature Communications(2023)10.1038/s41467-023-39593-0

N/A

0DataRank · unranked

22 citations

Jeremy Chase Crawford, E. Kaitlynn Allen, Danielle Severns, Shaoyuan Tan, Sherri L. Surman +6 more

Immune profiling of SARS-CoV-2 infection during pregnancy reveals NK cell and γδ T cell perturbations

JCI Insight(2023)10.1172/jci.insight.167157

N/A

0DataRank · unranked

21 citations

Brendon Y. Chua, Łukasz Kedzierski, Kevin J. Selva, Timon Damelang, Ebene R. Haycroft +49 more

How Estrogen, Testosterone, and Sex Differences Influence Serum Immunoglobulin Isotype Patterns in Mice and Humans

Viruses(2023)10.3390/v15020482

N/A

0DataRank · unranked

19 citations

Bart G. Jones, Rhiannon R. Penkert, Robert E. Sealy, Tony N. Marion, Paul G. Thomas +4 more

Protein kinase C delta regulates mononuclear phagocytes and hinders response to immunotherapy in cancer

Science Advances(2023)10.1126/sciadv.add3231

N/A

0DataRank · unranked

19 citations

Jeremiah Holt, Emilie L. Fisher, Laura M. Sipe, Margaret S. Bohm, S Joseph +13 more

Utility of nasal swabs for assessing mucosal immune responses towards SARS-CoV-2

Scientific Reports(2023)10.1038/s41598-023-44989-5

N/A

0DataRank · unranked

13 citations

Pamela H. Brigleb, Kasi Vegesana, Aisha Souquette, Kendall Whitt, Pamela Freiden +29 more

Comparisons of Pediatric and Adult SARS-CoV-2-Specific Antibodies up to 6 Months after Infection, Vaccination, or Hybrid Immunity

Journal of the Pediatric Infectious Diseases Society(2023)10.1093/jpids/piad107

N/A

0DataRank · unranked

9 citations

Wesley A. Cheng, Zion Congrave‐Wilson, Carolyn Jennifer Marentes Ruiz, Lauren Turner, Shirley Mendieta +10 more

Utility of nasal swabs for assessing mucosal immune responses towards SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548630

N/A

0DataRank · unranked

4 citations

Pamela H. Brigleb, Kasi Vegesana, Aisha Souquette, Kendall Whitt, Pamela Freiden +7 more

Establishing thresholds for cytokine storm and defining their relationship to disease severity in respiratory viral infections

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.06.548022

N/A

0DataRank · unranked

3 citations

Jeremy Chase Crawford, Joshua Wolf, A. Blair, Mona Agrawal, Laura V. Boywid +10 more

Diet-induced obesity impacts influenza disease severity and transmission dynamics in ferrets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.558609

N/A

0DataRank · unranked

3 citations

Rebekah Honce, Brandi Livingston, Virginia Hargest, Pamela Freiden, Lauren Lazure +8 more

CAR T-cell design dependent remodeling of the brain tumor immune microenvironment identify macrophages as key players that inhibit or promote anti-tumor activity

Research Square(2023)10.21203/rs.3.rs-2972427/v1

N/A

0DataRank · unranked

2 citations

Jorge Ibañez-Vega, Jeremy Chase Crawford, Ching‐Heng Chou, Cliff Guy, Michaela Meehl +9 more

Baseline innate and T cell populations are correlates of protection against symptomatic influenza virus infection independent of serology

Research Square(2023)10.21203/rs.3.rs-2371124/v1

N/A

0DataRank · unranked

1 citations

Robert C. Mettelman, Aisha Souquette, Lee-Ann Van de Velde, Kasi Vegesana, E. Kaitlynn Allen +20 more

Mucosal and systemic immune dynamics associated with COVID-19 outcomes: a longitudinal prospective clinical study

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.04.551867

N/A

0DataRank · unranked

1 citations

Armando S. Flores-Torres, John S. Franks, Sarah Y. Lang, Thomas Fabrizio, Kristin E. McNair +11 more

Biologic and clinical features of childhood gamma delta T-ALL: identification of STAG2/LMO2 γδ T-ALL as an extremely high risk leukemia in the very young

medRxiv(2023)10.1101/2023.11.06.23298028

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0DataRank · unranked

1 citations

Petri Pölönen, Lindsey E. Montefiori, Chun Shik Park, Ilaria Iacobucci, Allen Eng Juh Yeoh +75 more

Identification of Antigen-Specific T Cell Receptors with Combinatorial Peptide Pooling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569052

N/A

0DataRank · unranked

1 citations

David Pattinson, Guanchen He, Carl Barton, Sarah R. Chapin, Anastasia A. Minervina +5 more

Supplementary Data from Common Trajectories of Highly Effective CD19-Specific CAR T Cells Identified by Endogenous T-cell Receptor Lineages

Figshare(2023)10.1158/2159-8290.22541069.v1

Top 100%

0DataRank

Top 100%0 citations

Hyunjin Kim, Ching‐Heng Chou, Deanna Langfitt, Robert C. Mettelman, Anastasia A. Minervina +17 more

Antigen-specific CD4+ T cells exhibit distinct transcriptional phenotypes in the lymph node and blood following vaccination in humans

Research Square(2023)10.21203/rs.3.rs-3304466/v1

N/A

0DataRank · unranked

0 citations

Nicholas Borcherding, Wooseob Kim, Michael Quinn, Fangjie Han, Julian Q. Zhou +17 more

Principles and therapeutic applications of adaptive immunity

Cell(2024)10.1016/j.cell.2024.03.037

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0DataRank · unranked

288 citations

Marion Pepper, Paul G. Thomas, Hongbo Chi

Necroptosis blockade prevents lung injury in severe influenza

Nature(2024)10.1038/s41586-024-07265-8

N/A

0DataRank · unranked

113 citations

David F. Boyd, Sameer Nikhar, Ting Zhang, Ioannis Siokas, Lee-Ann Van de Velde +29 more

High expression of oleoyl-ACP hydrolase underpins life-threatening respiratory viral diseases

Cell(2024)10.1016/j.cell.2024.07.026

N/A

0DataRank · unranked

22 citations

Jeremy Chase Crawford, Deborah Gebregzabher, Ebony A. Monson, Robert C. Mettelman, Yanmin Wan +52 more

Biologic and Clinical Analysis of Childhood Gamma Delta T-ALL Identifies LMO2/STAG2 Rearrangements as Extremely High Risk

Cancer Discovery(2024)10.1158/2159-8290.cd-23-1452

N/A

0DataRank · unranked

15 citations

Chun Shik Park, Lindsey E. Montefiori, Ilaria Iacobucci, Petri Pölönen, Qingsong Gao +80 more

Variation in the basal immune state and implications for disease

eLife(2024)10.7554/elife.90091

N/A

0DataRank · unranked

13 citations

Paul G. Thomas, Aisha Souquette

Histone lysine demethylase 4 family proteins maintain the transcriptional program and adrenergic cellular state of MYCN-amplified neuroblastoma

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101468

N/A

0DataRank · unranked

12 citations

Jie Fang, Hongjian Jin, Shivendra V. Singh, Prahalathan Pichavaram, Qiong Wu +21 more

Single cell and TCR analysis of immune cells from AAV gene therapy-dosed Duchenne muscular dystrophy patients

Molecular Therapy — Methods & Clinical Development(2024)10.1016/j.omtm.2024.101349

N/A

0DataRank · unranked

10 citations

Mark A. Brimble, Alejandro Espinoza, Jane Owens, Laurence O. Whiteley, Sandra Casinghino +10 more

rAAV expressing a COBRA-designed influenza hemagglutinin generates a protective and durable adaptive immune response with a single dose

Journal of Virology(2024)10.1128/jvi.00781-24

N/A

0DataRank · unranked

8 citations

Stephen M. Winston, Isaiah L. Reeves, Jessica A. Gaevert, Yunyu Spence, Mark A. Brimble +8 more

Secondary bone marrow graft loss after third-party virus-specific T cell infusion: Case report of a rare complication

Nature Communications(2024)10.1038/s41467-024-47056-3

N/A

0DataRank · unranked

6 citations

Stefan Schattgen, Shanmuganathan Chandrakasan, E. Kaitlynn Allen, Mariah Jensen-Wachspress, Christopher A. Lazarski +12 more

Lack of memory recall in human CD4 T cells elicited by the first encounter with SARS-CoV-2

iScience(2024)10.1016/j.isci.2024.109992

N/A

0DataRank · unranked

1 citations

Siriruk Changrob, Paul G. Thomas, Patrick C. Wilson, Andrea J. Sant, Katherine A. Richards

Immune Cell Profiles of Patients with Sickle Cell Disease during Parvovirus B19–Induced Transient Red Cell Aplasia

Vaccines(2024)10.3390/vaccines12090984

N/A

0DataRank · unranked

1 citations

Rhiannon R. Penkert, Jane S. Hankins, Sherri L. Surman, Lee-Ann Van de Velde, Alyssa Cotton +7 more

RBM39 degrader invigorates natural killer cells to eradicate neuroblastoma despite cancer cell plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.21.586157

N/A

0DataRank · unranked

0 citations

Jie Fang, Hongjian Jin, Lee-Ann Van de Velde, Qiong Wu, A. Sanz Cortés +19 more

Multivalent S2-subunit Vaccines Provide Broad Protection Against Clade 1 Sarbecoviruses

Research Square(2024)10.21203/rs.3.rs-4177301/v1

N/A

0DataRank · unranked

0 citations

Peter Halfmann, Rajiv M. Patel, Kathryn Loeffler, Atsuhiro Yasuhara, Lee-Ann Van de Velde +10 more

Multivalent S2 subunit vaccines provide broad protection against Clade 1 sarbecoviruses in female mice

Nature Communications(2025)10.1038/s41467-025-55824-y

N/A

0DataRank · unranked

19 citations

Raj S. Patel, Kathryn Loeffler, Atsuhiro Yasuhara, Lee-Ann Van de Velde, Jie Yang +10 more

T cell receptor specificity landscape revealed through de novo peptide design

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2504783122

N/A

0DataRank · unranked

12 citations

Michael N. Pun, Anastasia A. Minervina, Philip Bradley, Paul G. Thomas, Armita Nourmohammad +1 more

TIRTL-seq: deep, quantitative and affordable paired TCR repertoire sequencing

Nature Methods(2025)10.1038/s41592-025-02907-9

N/A

0DataRank · unranked

11 citations

Allison M. Kirk, Samir Adhikari, Anastasia A. Minervina, Balaji Sundararaman, Kasi Vegesana +30 more

O-GlcNAc transferase plays dual antiviral roles by integrating innate immunity and lipid metabolism

Nature Communications(2025)10.1038/s41467-025-63085-y

N/A

0DataRank · unranked

8 citations

Chenxi Liang, Junjie Zhang, Weidong Wu, Nitesh Kumar, Zihao Liu +16 more

High expression of interleukin-18 receptor alpha correlates with severe respiratory viral disease and defines T cells with reduced cytotoxic signatures

Nature Communications(2025)10.1038/s41467-025-65262-5

N/A

0DataRank · unranked

3 citations

Jeremy Chase Crawford, Hayley A. McQuilten, Isabelle J. H. Foo, Lilith F. Allen, Deborah Gebregzabher +30 more

Modulation of cytokeratin and cytokine/chemokine expression following influenza virus infection of differentiated human tonsillar epithelial cells

Journal of Virology(2025)10.1128/jvi.01460-24

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0DataRank · unranked

2 citations

David C. Brice, Ahmed Sakr, Ahmed Kandeil, Jennifer DeBeauchamp, Mohamed A. Ghonim +12 more

High-Dose Inactivated Influenza Vaccine Inconsistently Improves Heterologous Antibody Responses in an Older Human Cohort

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf003

N/A

0DataRank · unranked

3 citations

Yang Ge, Jessica Knight, Hayley Hemme, Savannah M Hammerton, Amanda L. Skarlupka +7 more

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Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2424367122

N/A

0DataRank · unranked

3 citations

Soner Yildiz, E. Kaitlynn Allen, Hans Petersen, Mark E. Peeples, Sara S. El Zahed +13 more

Endogenous T cell responses to fusion-derived neoantigens in pediatric acute leukemias

Leukemia(2025)10.1038/s41375-025-02710-7

N/A

0DataRank · unranked

2 citations

Mohamed A. Ghonim, Stefan Schattgen, Bradley Muller, Lee-Ann Van de Velde, Tanya Khan +11 more

Highly cross-reactive and competent effectors dominate the CD8+ T cell response in Trypanosoma cruzi infection

The Journal of Immunology(2025)10.1093/jimmun/vkaf107

N/A

0DataRank · unranked

1 citations

Pradyot Dash, Walid Awad, Paul G. Thomas, Rick L. Tarleton, Molly Bunkofske

Diverse modes of T cell receptor sequence convergence define unique functional and cellular phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.31.657155

N/A

0DataRank · unranked

2 citations

Kasi Vegesana, William D. Hazelton, Anastasia A. Minervina, Sebastiaan Valkiers, Kamil Slowikowski +6 more

Receptor Allostery Promotes Context-Dependent Sonic Hedgehog Signaling During Embryonic Development

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.28.635336

N/A

0DataRank · unranked

0 citations

Miriam E. Dillard, Mohamed Ghonim, Yan Zhang, Daniel P. Stewart, Robin Canac +11 more

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BIROn (Birkbeck, University of London)(2025)10.48550/arxiv.2502.08214

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0DataRank · unranked

0 citations

Vasilisa A. Kovaleva, Carl Barton, Paul G. Thomas, Mikhail V. Pogorelyy, Hannah V. Meyer +2 more

TIRTL-seq 384-well v1

(2025)10.17504/protocols.io.eq2lyx37wgx9/v1

N/A

0DataRank · unranked

0 citations

Allison M. Kirk, Samir Adhikari, Balaji Sundararaman, Paul G. Thomas, Mikhail V. Pogorelyy

TIRTL-seq 96-well v1

(2025)10.17504/protocols.io.kqdg3k6xpv25/v1

N/A

0DataRank · unranked

0 citations

Allison M. Kirk, Samir Adhikari, Balaji Sundararaman, Paul G. Thomas, Mikhail V. Pogorelyy

TCR2HLA: calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.18.665436

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0DataRank · unranked

0 citations

Anastasia A. Minervina, Mikhail V. Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters +11 more

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The Journal of Immunology(2025)10.1093/jimmun/vkaf094

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0DataRank · unranked

0 citations

Val Piekarsa, Sofia Kossida, Joshua Croteau, Amy Huei‐Yi Lee, Robert Balderas +85 more

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bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669062

N/A

0DataRank · unranked

0 citations

Lee-Ann Van de Velde, Lisa Kainacher, Johanna Ruoff, Ana Bici, Nicolas B. Peterson +8 more

Unbiased and error-detecting combinatorial pooling experiments with balanced constant-weight Gray codes for consecutive positives detection

Bioinformatics(2025)10.1093/bioinformatics/btaf611

N/A

0DataRank · unranked

0 citations

Vasilisa A. Kovaleva, Carl Barton, Paul G. Thomas, Mikhail V. Pogorelyy, Hannah V. Meyer +2 more

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The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1716

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0DataRank · unranked

0 citations

Paul G. Thomas, Brydie R. Huckestein

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The Journal of Immunology(2025)10.1093/jimmun/vkaf283.263

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0DataRank · unranked

0 citations

Jeremy Chase Crawford, Sarah L. Walden, Fangjie Han, Derek E. Byers, Ali H. Ellebedy +3 more

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The Journal of Immunology(2025)10.1093/jimmun/vkaf283.2393

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0DataRank · unranked

0 citations

Chun-Yang Lin, Ashley Castellaw, Kaity Allen, Ericka Kirkpatrick, Scott A. Rown +6 more

TIRTL-seq 384-well v2

(2025)10.17504/protocols.io.eq2lyx37wgx9/v2

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0DataRank · unranked

0 citations

Allison M. Kirk, Samir Adhikari, Balaji Sundararaman, Paul G. Thomas, Mikhail V. Pogorelyy

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mBio(2025)10.1128/mbio.01491-25

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0DataRank · unranked

0 citations

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Journal of Hepatology(2025)10.1016/j.jhep.2025.10.027

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0DataRank · unranked

1 citations

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Cell(2020)10.1016/j.cell.2020.02.050

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0DataRank · unranked

562 citations

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Exuberant fibroblast activity compromises lung function via ADAMTS4

Nature(2020)10.1038/s41586-020-2877-5

N/A

0DataRank · unranked

228 citations

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Necroptosis restricts influenza A virus as a stand-alone cell death mechanism

The Journal of Experimental Medicine(2020)10.1084/jem.20191259

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0DataRank · unranked

100 citations

Bart Tummers, David F. Boyd, Ting Zhang, Chaoran Yin, Avishekh Gautam +8 more

A population of proinflammatory T cells coexpresses αβ and γδ T cell receptors in mice and humans

The Journal of Experimental Medicine(2020)10.1084/jem.20190834

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0DataRank · unranked

49 citations

Caroline E. Sutton, Kristin Ladell, Emma J. Grant, James E. McLaren, Fiona Roche +22 more

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Blood Cancer Discovery(2020)10.1158/2643-3249.bcd-19-0041

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0DataRank · unranked

10 citations

Zhaohui Gu, Stephanie M. Dobson, Željko Antić, Jeremy Chase Crawford, Xiaotu Ma +38 more

A Cell for the Ages: Human γδ T Cells across the Lifespan

International Journal of Molecular Sciences(2020)10.3390/ijms21238903

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0DataRank · unranked

47 citations

Paul G. Thomas, Brandi L. Clark

Linking T cell receptor sequence to transcriptional profiles with clonotype neighbor graph analysis (CoNGA)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.04.134536

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0DataRank · unranked

13 citations

Kate Manley, Jeremy Chase Crawford, Aisha Souquette, Álvaro Martínez Barrio, Michael J. T. Stubbington +3 more

TCR meta-clonotypes for biomarker discovery with tcrdist3: identification of public, HLA-restricted SARS-CoV-2 associated TCR features

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.24.424260

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0DataRank · unranked

10 citations

Stefan Schattgen, Liel Cohen-Lavi, Jeremy Chase Crawford, Aisha Souquette, Jessica A. Gaevert +5 more

Characterizing Emerging Canine H3 Influenza Viruses.

Apollo (University of Cambridge)(2020)10.17863/cam.52579

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0DataRank · unranked

0 citations

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Detection of Antibodies against Turkey Astrovirus in Humans

UNC Libraries(2020)10.17615/wn3y-eh03

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0DataRank · unranked

0 citations

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Cytomegalovirus infection enhances the immune response to influenza

UNC Libraries(2020)10.17615/yb5d-rf66

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0DataRank · unranked

0 citations

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Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA)

Nature Biotechnology(2021)10.1038/s41587-021-00989-2

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0DataRank · unranked

136 citations

Kate Manley, Jeremy Chase Crawford, Aisha Souquette, Álvaro Martínez Barrio, Michael J. T. Stubbington +3 more

Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1–Dependent Myeloid Cells

Cancer Research(2021)10.1158/0008-5472.can-21-0691

N/A

0DataRank · unranked

49 citations

E. Kaitlynn Allen, Jeremy Chase Crawford, Taylor L. Wilson, Clifford S. Guy, Marion Russier +8 more

NUDT15 polymorphism influences the metabolism and therapeutic effects of acyclovir and ganciclovir

Nature Communications(2021)10.1038/s41467-021-24509-7

N/A

0DataRank · unranked

24 citations

Takanori Mizuno, Daniel Rehling, Colton Smith, Brandi L. Clark, Xujie Zhao +14 more

Beryllium-specific CD4+ T cells induced by chemokine neoantigens perpetuate inflammation

Journal of Clinical Investigation(2021)10.1172/jci144864

N/A

0DataRank · unranked

18 citations

Jeremy Chase Crawford, Alex N. Tinega, Laurie G. Landry, Frances Crawford, Douglas G. Mack +11 more

Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses

Viruses(2021)10.3390/v13091786

N/A

0DataRank · unranked

14 citations

Daniel Luque Duque, Grant Lythe, Carmen Molina-Parı́s, Paul G. Thomas, Jessica A. Gaevert

Activated CD4+ T cells and CD14hiCD16+ monocytes correlate with antibody response following influenza virus infection in humans

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100237

N/A

0DataRank · unranked

10 citations

Christine M. Oshansky, Xi-zhi J. Guo, Jacqui Ralston, Timothy Wood, Gary Reynolds +51 more

Host Predictors of Broadly Cross-Reactive Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern Differ Between Infection and Vaccination

Clinical Infectious Diseases(2021)10.1093/cid/ciab996

N/A

0DataRank · unranked

11 citations

Sean Cherry, Elaine Tuomanen, Ericka Kirkpatrick, Chun-Yang Lin, Kim Allison +35 more

SARS-CoV-2 mRNA vaccination elicits robust and persistent T follicular helper cell response in humans

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.08.459485

N/A

0DataRank · unranked

52 citations

Anastasia A. Minervina, Mikhail V. Pogorelyy, Jackson S. Turner, Wooseob Kim, Elizaveta Kalaidina +23 more

Common trajectories of highly effective CD19-specific CAR T cells identified by endogenous T cell receptor lineages

medRxiv(2021)10.1101/2021.12.05.21266287

N/A

0DataRank · unranked

5 citations

Hyunjin Kim, Ching‐Heng Chou, Deanna Langfitt, E. Kaitlynn Allen, Jean‐Yves Métais +13 more

Count on us: T cells in SARS-CoV-2 infection and vaccination

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100562

N/A

0DataRank · unranked

135 citations

Paul G. Thomas, Katherine Kedzierska

Common Trajectories of Highly Effective CD19-Specific CAR T Cells Identified by Endogenous T-cell Receptor Lineages

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1508

N/A

0DataRank · unranked

61 citations

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