Sonny T. M. Lee

Agricultural and Biological SciencesEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome”.

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Genome biology(2020)10.1186/s13059-020-02195-w

N/A

4.4DataRank · unranked

261 citations

Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid +11 more

Prospective correlation between the patient microbiome with response to and development of immune-mediated adverse effects to immunotherapy in lung cancer

BMC Cancer(2021)10.1186/s12885-021-08530-z

N/A

1.9DataRank · unranked

73 citations

Meeta Yadav, Ben Liu, Muhammad Furqan, Qun Dai, Shailesh K. Shahi +12 more

Dietary tryptophan metabolite released by intratumoral Lactobacillus reuteri facilitates immune checkpoint inhibitor treatment

Cell(2023)10.1016/j.cell.2023.03.011

N/A

0.979DataRank · unranked

683 citations

Alex McPherson, Catherine M. Phelps, Surya Prakash Pandey, Colin R. Laughlin, Jake H. Shapira +20 more

Metabolic independence drives gut microbial colonization and resilience in health and disease

Genome biology(2023)10.1186/s13059-023-02924-x

N/A

0.697DataRank · unranked

103 citations

Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet +15 more

Exercise-induced microbiota metabolite enhances CD8 T cell antitumor immunity promoting immunotherapy efficacy

Cell(2025)10.1016/j.cell.2025.06.018

N/A

0.633DataRank · unranked

67 citations

Nathaniel Willis, Tingting Duan, Amanda Lee, Yue Zhang, K.J. Dhanaraj +32 more

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.29.069278

N/A

0.449DataRank · unranked

19 citations

Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid +11 more

Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model

mSystems(2023)10.1128/msystems.00703-23

N/A

0.291DataRank · unranked

4 citations

Leah Heeren, Abigail Kamke, Kourtney Monk, Sophia Pogranichniy, Trey Summers +6 more

Prospective correlation between the patient microbiome with response to and development of immune-mediated adverse effects to immunotherapy in lung cancer.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.e21024

N/A

0DataRank · unranked

6 citations

Meeta Yadav, Ben Liu, Muhammad Furqan, Qun Dai, Shailesh K. Shahi +12 more

Stability and volatility shape the gut bacteriome and Kazachstania slooffiae dynamics in preweaning, nursery and adult pigs

Scientific Reports(2022)10.1038/s41598-022-19093-9

N/A

0DataRank · unranked

11 citations

Qinghong Ran, Victoria Dorman, Kourtney Rumback, Sophia Pogranichniy, Kaitlyn Ward +5 more

Pseudomonas cultivated from Andropogon gerardii rhizosphere show functional potential for promoting plant host growth and drought resilience

BMC Genomics(2022)10.1186/s12864-022-09019-0

N/A

0DataRank · unranked

11 citations

Abigail Kamke, Kaitlyn Ward, Eli Hartung, Qinghong Ran, Brandi Feehan +5 more

Perspective: Simple State Communities to Study Microbial Interactions: Examples and Future Directions

Frontiers in Microbiology(2022)10.3389/fmicb.2022.801864

N/A

0DataRank · unranked

5 citations

Kaitlyn Ward, Abigail Kamke, Qinghong Ran, Brandi Feehan, Tanner Richie +3 more

Culturomics of Andropogon gerardii rhizobiome revealed nitrogen transforming capabilities of stress-tolerant Pseudomonas under drought conditions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500515

N/A

0DataRank · unranked

3 citations

Abigail Kamke, Kaitlyn Ward, Eli Hartung, Qinghong Ran, Brandi Feehan +5 more

Stability and volatility shape the gut bacteriome and mycobiome dynamics in a pig model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478893

N/A

0DataRank · unranked

2 citations

Qinghong Ran, Victoria Dorman, Kourtney Rumback, Sophia Pogranichniy, Kaitlyn Ward +5 more

Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10–/– Mice

Gastroenterology(2021)10.1053/j.gastro.2021.05.054

N/A

0DataRank · unranked

46 citations

Sawako Miyoshi, Tom O. Delmont, Candace M. Cham, Sonny T. M. Lee, Aki Sakatani +12 more

Novel Complete Methanogenic Pathways in Longitudinal Genomic Study of Monogastric Age-Associated Archaea

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.03.518977

N/A

0DataRank · unranked

0 citations

Qinghong Ran, Victoria Dorman, Kourtney Rumback, Sophia Pogranichniy, Kaitlyn Ward +4 more

Metagenomic alterations in gut microbiota precede and predict onset of colitis in the IL10 gene-deficient murine model

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.078022

N/A

0DataRank · unranked

2 citations

Sonny T. M. Lee, Megan S. Kennedy, Mora Puertolas, Mary Frith, Jason Koval +5 more

Early-life microbial intervention reduces colitis risk promoted by antibiotic-induced gut dysbiosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.11.987412

N/A

0DataRank · unranked

2 citations

Sawako Miyoshi, Tom O. Delmont, Candace M. Cham, Sonny T. M. Lee, Aki Sakatani +11 more

Novel complete methanogenic pathways in longitudinal genomic study of monogastric age-associated archaea

Animal Microbiome(2023)10.1186/s42523-023-00256-6

N/A

0DataRank · unranked

11 citations

Qinghong Ran, Victoria Dorman, Kourtney Rumback, Sophia Pogranichniy, Kaitlyn Ward +4 more

Ammonia-oxidizing archaea and bacteria differentially contribute to ammonia oxidation in soil under precipitation gradients and land legacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566028

N/A

0DataRank · unranked

5 citations

Anna Kazarina, Paige M. Hansen, Kaitlyn Ward, Christopher Hargreaves, Nicholas Reese +10 more

Metabolism diversification of ammonia-oxidizing archaea and bacteria under different precipitation gradients and land legacies

Applied Soil Ecology(2024)10.1016/j.apsoil.2024.105831

N/A

0DataRank · unranked

4 citations

Anna Kazarina, Paige M. Hansen, Kaitlyn Ward, Christopher Hargreaves, Nicholas Reese +10 more

Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.03.510649

N/A

0DataRank · unranked

1 citations

Leah Heeren, Abigail Kamke, Sophia Pogranichniy, Kourtney Monk, Trey Summers +6 more

Metabolic independence drives gut microbial colonization and resilience in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.02.433653

N/A

0DataRank · unranked

34 citations

Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet +15 more