Alan Chen

Also affiliated with Duke Cancer Institute

Biochemistry, Genetics and Molecular BiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Impact of preference for yoga or cognitive behavioral therapy in patients with generalized anxiety disorder on treatment outcomes and engagement”.

Impact of preference for yoga or cognitive behavioral therapy in patients with generalized anxiety disorder on treatment outcomes and engagement

Journal of Psychiatric Research(2022)10.1016/j.jpsychires.2022.07.008

N/A

0.573DataRank · unranked

10 citations

Samrachana Adhikari, Alan Chen, Rebecca E. Lubin, Emma Jennings, Madeleine Rassaby +11 more

Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates

Molecular Cell(2021)10.1016/j.molcel.2020.12.017

N/A

0DataRank · unranked

91 citations

Paul M. Gasper, Luyi Cheng, Lien B. Lai, Simi Kaur, Venkat Gopalan +3 more

Evaluation of SARS-CoV-2 IgG antibody reactivity in patients with systemic lupus erythematosus: analysis of a multi-racial and multi-ethnic cohort

The Lancet Rheumatology(2021)10.1016/s2665-9913(21)00114-4

N/A

0DataRank · unranked

24 citations

Allison Guttmann, Mala Masson, Mimi Kim, Rebecca H. Haberman, Rochelle Castillo +79 more

Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA)

Molecules(2021)10.3390/molecules26154620

N/A

0DataRank · unranked

8 citations

Sweta Vangaveti, Goh Woon Lee, Walid M. Fahssi, Waqas S. Awan, Yi‐Cheng Huang +3 more

Factors associated with delays in the search for care in under-5 deaths in Yucatán, Mexico

Salud Pública de México(2021)10.21149/12216

N/A

0DataRank · unranked

4 citations

Elsa Rodríguez-Angulo, Erin B. Palmisano, Ricardo Ojeda-Rodríguez, Rafael Ojeda-Baranda, María Guadalupe Andueza-Pecha +8 more

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.25.465737

N/A

0DataRank · unranked

2 citations

Elise N White, Naomi L. Brandt, Angela M Yu, Alan Chen, Julius B. Lucks +1 more

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

Nucleic Acids Research(2022)10.1093/nar/gkac102

N/A

0DataRank · unranked

39 citations

Elise N White, Naomi L. Brandt, Angela M Yu, Alan Chen, Julius B. Lucks +1 more

Toehold clipping: A mechanism for remote control of DNA strand displacement

Nucleic Acids Research(2022)10.1093/nar/gkac1152

N/A

0DataRank · unranked

19 citations

Johnsi Mathivanan, Hannah Talbot, Hana Zeghal, Sweta Vangaveti, Jia Sheng +3 more

Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches

Genes(2022)10.3390/genes13030540

N/A

0DataRank · unranked

17 citations

Christopher A. Myers, Alan Chen, Sweta Vangaveti, Rebecca J. D’Esposito

Beyond lipids: Novel mechanisms for parenteral nutrition–associated liver disease

Nutrition in Clinical Practice(2022)10.1002/ncp.10830

N/A

0DataRank · unranked

12 citations

Jamie Nilson, Srinivas Govindan, Alan Chen, Aditya Jain, Varsha Arun +4 more

Design, Synthesis, and Characterization of a Novel 2′–5′-Linked Amikacin-Binding Aptamer: An Experimental and MD Simulation Study

ACS Chemical Biology(2022)10.1021/acschembio.2c00653

N/A

0DataRank · unranked

5 citations

Zhixue Bai, Alan Chen, Jia Sheng, Johnsi Mathivanan

High-throughput single-molecule quantification of individual base stacking energies in nucleic acids

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.25.493108

N/A

0DataRank · unranked

4 citations

Kevin J. Thomas, Arun Richard Chandrasekaran, Javier Vilcapoma, Andrew Hayden, Kacey Kilpatrick +5 more

Paradoxical Effects of Depression on Psoriatic Arthritis Outcomes in a Combined Psoriasis-Psoriatic Arthritis Center

medRxiv(2022)10.1101/2022.09.19.22280104

N/A

0DataRank · unranked

0 citations

Seungha Um, Sydney Catron, Alan Chen, Eileen Lydon, Malavika Attur +6 more

High-throughput single-molecule quantification of individual base stacking energies in nucleic acids

Nature Communications(2023)10.1038/s41467-023-36373-8

N/A

0DataRank · unranked

42 citations

Kevin J. Thomas, Arun Richard Chandrasekaran, Javier Vilcapoma, Andrew Hayden, Kacey Kilpatrick +5 more

Paradoxical Effects of Depression on Psoriatic Arthritis Outcomes in a Combined Psoriasis-Psoriatic Arthritis Center

Journal of Psoriasis and Psoriatic Arthritis(2023)10.1177/24755303231186405

N/A

0DataRank · unranked

4 citations

Seungha Um, Sydney Catron, Alan Chen, Eileen Lydon, Malavikalakshmi Attur +6 more

Predicting Small Molecule Ligand – RNA Binding Pocket Binding Modes Using Metadynamics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.04.560960

N/A

0DataRank · unranked

0 citations

Alan Chen, Zhixue Bai

Differential roles of normal and lung cancer-associated fibroblasts in microvascular network formation

APL Bioengineering(2024)10.1063/5.0188238

N/A

0DataRank · unranked

10 citations

Pankaj Mogha, Alan Chen, Scott Antonia, Shyni Varghese, Naveen Natesh

The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch

Nucleic Acids Research(2024)10.1093/nar/gkae231

N/A

0DataRank · unranked

7 citations

Elise N White, Konstantin Kuznedelov, Luyi Cheng, Angela M Yu, Rivaan Kakkaramadam +4 more

Mutation of two intronic nucleotides alters RNA structure and dynamics inhibiting MBNL1 and RBFOX1 regulated splicing of the Insulin Receptor

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.08.574689

N/A

0DataRank · unranked

1 citations

Melissa A. Hale, Joseph A. Ellis, Samantha Biaesch, Sweta Vangaveti, Kaalak Reddy +3 more

Elucidating the influence of RNA modifications and Magnesium ions on tRNA Phe conformational dynamics in S. cerevisiae : Insights from Replica Exchange Molecular Dynamics simulations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.11.584441

N/A

0DataRank · unranked

0 citations

Rebecca J. D’Esposito, Sweta Vangaveti, Alan Chen, Zohreh Nowzari

Sequence, structure, and affinity of miR-34a binding sites determine repression efficacy

Nucleic Acids Research(2025)10.1093/nar/gkaf633

N/A

0DataRank · unranked

5 citations

David Kosek, Seyedeh Elnaz Banijamali, Walter Ferreira Becker, Juliane Müller, Christina Karadiakos +7 more

Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex

iScience(2020)10.1016/j.isci.2020.101866

N/A

0DataRank · unranked

6 citations

Sweta Vangaveti, S. Ranganathan, Song Mao, Max Daniel Su, Alan Chen +2 more

Investigating Polarity Effects in DNA Base Stacking

JACS Au(2025)10.1021/jacsau.5c01318

N/A

0DataRank · unranked

2 citations

Chai S. Kam, Tristan Melfi, Sweta Vangaveti, Alan Chen, Ken Halvorsen +1 more