Yuanfang Guan

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.2Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Papers

Driven by 58 papers — median percentile 15. Top paper: “Functional Analysis of Gene Duplications in Saccharomyces cerevisiae”.

Functional Analysis of Gene Duplications in Saccharomyces cerevisiae

Genetics(2007)10.1534/genetics.106.064329

N/A

7.2DataRank · unranked

175 citations

Maitreya J Dunham, Olga G Troyanskaya, Yuanfang Guan

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks

Nucleic Acids Research(2012)10.1093/nar/gks458

N/A

5.5DataRank · unranked

137 citations

Christopher Y. Park, Casey S. Greene, Lars A. Bongo, Yuanfang Guan, Olga G. Troyanskaya +2 more

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Nature Communications(2016)10.1038/ncomms12460

N/A

3.8DataRank · unranked

87 citations

Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey +108 more

A community effort to create standards for evaluating tumor subclonal reconstruction

Nature Biotechnology(2020)10.1038/s41587-019-0364-z

N/A

2.8DataRank · unranked

100 citations

Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David +28 more

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100323

N/A

2.3DataRank · unranked

110 citations

Bálint Pataki, Roberto Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum +13 more

Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002957

N/A

1.9DataRank · unranked

70 citations

Aaron K. Wong, Casey S. Greene, Jessica Rowland, Yuanfang Guan, Lars A. Bongo +4 more

Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge

npj Digital Medicine(2021)10.1038/s41746-021-00414-7

N/A

1.9DataRank · unranked

65 citations

Jennifer E. Schaff, Marlena Duda, Bálint Pataki, Ming Sun, Phil Snyder +65 more

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Cell Systems(2020)10.1016/j.cels.2020.06.013

N/A

1.1DataRank · unranked

32 citations

Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Xiaoyu Song +87 more

A critical assessment of Mus musculusgene function prediction using integrated genomic evidence

Genome Biology(2008)10.1186/gb-2008-9-s1-s2

N/A

0.834DataRank · unranked

258 citations

Murat Tasan, Chad L. Myers, Hyunju Lee, Trupti Joshi, Chao Zhang +35 more

Machine learning empowers phosphoproteome prediction in cancers

Bioinformatics(2020)10.1093/bioinformatics/btz639

N/A

0.693DataRank · unranked

16 citations

Yuanfang Guan, Hongyang Li

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

A community effort to optimize sequence-based deep learning models of gene regulation

Nature Biotechnology(2024)10.1038/s41587-024-02414-w

Top 30%

0.676DataRank

Top 30%35 citations

Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, Nayeon Kim +106 more

FastClone is a probabilistic tool for deconvoluting tumor heterogeneity in bulk-sequencing samples

Nature Communications(2020)10.1038/s41467-020-18169-2

N/A

0.617DataRank · unranked

60 citations

Xueqing Wang, Hongjiu Zhang, Peter Ulintz, Hongyang Li, Yuanfang Guan +1 more

Representation of molecules for drug response prediction

Briefings in Bioinformatics(2021)10.1093/bib/bbab393

N/A

0.606DataRank · unranked

56 citations

Xi Chen, Daiyao Yi, Hongyang Li, Yuanfang Guan, Xin An

DeepSleep convolutional neural network allows accurate and fast detection of sleep arousal

Communications Biology(2021)10.1038/s42003-020-01542-8

N/A

0.598DataRank · unranked

53 citations

Yuanfang Guan, Hongyang Li

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3085608

N/A

0.557DataRank · unranked

40 citations

Jonathan Stubblefield, Jake Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker +3 more

Gene expression profiles of diabetic kidney disease and neuropathy in eNOS knockout mice: Predictors of pathology and RAS blockade effects

The FASEB Journal(2021)10.1096/fj.202002387r

N/A

0.538DataRank · unranked

13 citations

Lucy M. Hinder, Hongyu Zhang, Ridvan Eksi, Viji Nair, Sean Eddy +12 more

A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis

JAMA Network Open(2022)10.1001/jamanetworkopen.2022.27423

N/A

0.489DataRank · unranked

25 citations

Thanh Minh Nguyen, Robert J. Allaway, Jelai Wang, Verena Chung, Thomas Yu +43 more

Detecting Asymmetric Patterns and Localizing Cancers on Mammograms

Patterns(2020)10.1016/j.patter.2020.100106

N/A

0.457DataRank · unranked

20 citations

Xueqing Wang, Hongyang Li, Zhenning Zhang, Xianghao Chen, Omer Siddiqui +3 more

Machine learning for artemisinin resistance in malaria treatment across in vivo-in vitro platforms

iScience(2022)10.1016/j.isci.2022.103910

N/A

0.416DataRank · unranked

15 citations

Jiantao Guo, Hongyang Li, Yuanfang Guan, Hanrui Zhang

Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction

Nature Biotechnology(2024)10.1038/s41587-024-02250-y

Top 46%

0.396DataRank

Top 46%13 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +83 more

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.130971

N/A

0.385DataRank · unranked

12 citations

Bálint Pataki, Roberto Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum +13 more

Developing better digital health measures of Parkinson’s disease using free living data and a crowdsourced data analysis challenge

PLOS Digital Health(2023)10.1371/journal.pdig.0000208

N/A

0.373DataRank · unranked

11 citations

Henryk Borzymowski, Yuanfang Guan, Yidi Huang, Ayala Matzner, Alex Page +21 more

Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.904722

N/A

0.330DataRank · unranked

8 citations

Jennifer E. Schaff, Marlena Duda, Bálint Pataki, Ming Sun, Phil Snyder +38 more

A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis

medRxiv(2021)10.1101/2021.10.25.21265495

N/A

0.325DataRank · unranked

6 citations

Thanh Nguyen, Robert J. Allaway, Jelai Wang, Verena Chung, Thomas Yu +17 more

Crowd-sourced machine learning prediction of long COVID using data from the National COVID Cohort Collaborative

EBioMedicine(2024)10.1016/j.ebiom.2024.105333

N/A

0.241DataRank · unranked

4 citations

Johanna J. Loomba, Emily Pfaff, Fangfang Xia, Zixuan Zhao, Yitan Zhu +90 more

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157

N/A

0.190DataRank · unranked

2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

Multilevel Modeling of Joint Damage in Rheumatoid Arthritis

(2022)10.22541/au.165828097.71839600/v3

N/A

0.170DataRank · unranked

2 citations

Yuanfang Guan, Hongyang Li

Developing better digital health measures of Parkinson’s disease using free living data and a crowdsourced data analysis challenge

medRxiv(2021)10.1101/2021.10.20.21265298

N/A

0.165DataRank · unranked

2 citations

Henryk Borzymowski, Yuanfang Guan, Yidi Huang, Ayala Matzner, Alex Page +21 more

Accelerating Cough-Based Algorithms for Pulmonary Tuberculosis Screening: Results From the CODA TB DREAM Challenge

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf572

Top 70%

0.165DataRank

Top 70%2 citations

Solveig K. Sieberts, Mihaja Raberahona, Sophie Huddart, Larsson Omberg, Rivo Andry Rakotoarivelo +50 more

ASOs are an effective treatment for disease-associated oligodendrocyte signatures in premanifest and symptomatic SCA3 mice

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500473

N/A

0.165DataRank · unranked

2 citations

Annie J. Zalon, Danielle M. DiFranco, Alexandra F. Putka, Nicholas R. Stec, Sabrina I. Jarrah +6 more

Deep learning identifies erroneous microarray-based, gene-level conclusions in literature

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab089

N/A

0.137DataRank · unranked

1 citations

Daiyao Yi, Xianghao Chen, Yuanfang Guan, Yanan Qin

Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.14.495937

N/A

0.104DataRank · unranked

1 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +24 more

Timesias: A machine learning pipeline for predicting outcomes from time-series clinical records

STAR Protocols(2021)10.1016/j.xpro.2021.100639

N/A

0DataRank · unranked

0 citations

Daiyao Yi, Yuanfang Guan, Hanrui Zhang

Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.07.459298

N/A

0DataRank · unranked

0 citations

Daiyao Yi, Hongyang Li, Bradley Godfrey, Lisa R. Mathew, Christopher L. O’Connor +5 more

Impaired Oligodendrocyte Maturation Is an Early Feature in SCA3 Disease Pathogenesis

Journal of Neuroscience(2022)10.1523/jneurosci.1954-20.2021

N/A

0DataRank · unranked

55 citations

Annie J. Zalon, Hongjiu Zhang, Danielle M. DiFranco, Nicholas R. Stec, Zaid Haque +6 more

Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2020)10.1109/tcbb.2020.3027744

N/A

0DataRank · unranked

37 citations

Keyu Li, Xianghao Chen, Wei Dong, Karl Walker, Jake Qualls +5 more

Deep Learning Identifies Digital Biomarkers for Self-Reported Parkinson's Disease

Patterns(2020)10.1016/j.patter.2020.100042

N/A

0DataRank · unranked

77 citations

Kaiwen Deng, Hongyang Li, Roger L. Albin, Yuanfang Guan, Hanrui Zhang

Multilevel Modeling of Joint Damage in Rheumatoid Arthritis

Advanced Intelligent Systems(2022)10.1002/aisy.202200184

N/A

0DataRank · unranked

4 citations

Yuanfang Guan, Hongyang Li

Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010040

N/A

0DataRank · unranked

3 citations

Ridvan Eksi, Daiyao Yi, Bradley Godfrey, Lisa R. Mathew, Christopher L. O’Connor +5 more

Multilevel Modeling of Joint Narrowing in Rheumatoid Arthritis

(2022)10.22541/au.165828097.71839600/v1

N/A

0DataRank · unranked

0 citations

Yuanfang Guan, Hongyang Li

Protocol for using Ciclops to build models trained on cross-platform transcriptome data for clinical outcome prediction

STAR Protocols(2022)10.1016/j.xpro.2022.101583

N/A

0DataRank · unranked

0 citations

Hanrui Zhang, Yuanfang Guan, Elysia Chou

Harmonizing across datasets to improve the transferability of drug combination prediction

Communications Biology(2023)10.1038/s42003-023-04783-5

N/A

0DataRank · unranked

8 citations

Ziyan Wang, Yiyang Nan, Bulat Zagidullin, Daiyao Yi, Jing Tang +2 more

Imp 1.0 Filtered Human Functional Network

Zenodo (CERN European Organization for Nuclear Research)(2017)10.5281/zenodo.822470

Top 100%

0DataRank

Top 100%0 citations

C. H. Park, Casey S. Greene, LA Bongo, Yuanfang Guan, OG Troyanskaya +1 more

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w

N/A

0DataRank · unranked

0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

ASOs are an effective treatment for disease-associated oligodendrocyte signatures in premanifest and symptomatic SCA3 mice

Molecular Therapy(2024)10.1016/j.ymthe.2024.02.033

N/A

0DataRank · unranked

20 citations

Annie J. Zalon, Danielle M. DiFranco, Alexandra F. Putka, Nicholas R. Stec, Sabrina I. Jarrah +6 more

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Nature Communications(2016)10.1038/ncomms13205

N/A

0DataRank · unranked

0 citations

Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey +113 more

A lipid metabolism defect is an underlying contributor to Diamond Blackfan anemia syndrome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.22.654334

N/A

0DataRank · unranked

1 citations

Yu Wang, Joseph C. Min, Xiaofang Liu, Greggory Myers, Lei Yu +18 more

ImageDoubler: image-based doublet identification in single-cell sequencing

Nature Communications(2025)10.1038/s41467-024-55434-0

N/A

0DataRank · unranked

0 citations

Xinya Xu, Manqi Zhou, Hongyang Li, Evan T. Keller, Gregory Shelley +4 more

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

UNC Libraries(2020)10.17615/htpk-dq17

Top 100%

0DataRank

Top 100%0 citations

E.T. Merrill, Qilin Dong, Xia Shen, Laura Caberlotto, Arno Klein +95 more

Imp 1.0 Filtered Human Functional Network

Zenodo (CERN European Organization for Nuclear Research)(2017)10.5281/zenodo.822469

Top 100%

0DataRank

Top 100%0 citations

C. H. Park, Casey S. Greene, LA Bongo, Yuanfang Guan, OG Troyanskaya +1 more

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

UNC Libraries(2020)10.17615/ka8q-bk87

Top 100%

0DataRank

Top 100%0 citations

Corrado Priami, Jimit Doshi, Roland Krause, Kong, Dehan, Aristeidis Sotiras +95 more

Auto-annotating sleep stages based on polysomnographic data

Patterns(2021)10.1016/j.patter.2021.100371

N/A

0DataRank · unranked

31 citations

Xueqing Wang, Hongyang Li, Soham Mehendale, Yuanfang Guan, Hanrui Zhang

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89

N/A

0DataRank · unranked

0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

Fast decoding cell type–specific transcription factor binding landscape at single-nucleotide resolution

Genome Research(2021)10.1101/gr.269613.120

N/A

0DataRank · unranked

29 citations

Yuanfang Guan, Hongyang Li

Evidence of widespread, independent sequence signature for transcription factor cobinding

Genome Research(2020)10.1101/gr.267310.120

N/A

0DataRank · unranked

8 citations

Hongyang Li, Xueqing Wang, Yuanfang Guan, Manqi Zhou

Yuanfang Guan

Indexed papers

Top data-sharing exemplar

Papers