Kami Ahmad

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with Fred Hutch Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.4Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Papers

Driven by 38 papers — median percentile 91. Top paper: “Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation”.

Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation

eLife(2020)10.7554/elife.63274

N/A

3.6DataRank · unranked

166 citations

Jorja G. Henikoff, Hatice S Kaya-Okur, Kami Ahmad, Steven Henikoff

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones

eLife(2020)10.7554/elife.61090

N/A

1.9DataRank · unranked

72 citations

Michael P. Meers, Derek H. Janssens, Jorja G. Henikoff, Heather Feldman, Patrick J. Paddison +6 more

CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells

Genome biology(2022)10.1186/s13059-022-02642-w

N/A

1.5DataRank · unranked

64 citations

Dominik J. Otto, Michael P. Meers, Manu Setty, Kami Ahmad, Steven Henikoff +1 more

A Comprehensive Map of Insulator Elements for the Drosophila Genome

PLoS Genetics(2010)10.1371/journal.pgen.1000814

N/A

0.877DataRank · unranked

344 citations

Christopher D. Brown, Parantu K. Shah, Yanxiao Zhang, Carolyn A. Morrison, Philipp Kapranov +11 more

Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

Nature Biotechnology(2021)10.1038/s41587-021-00865-z

N/A

0.805DataRank · unranked

213 citations

Scott N. Furlan, Anca B. Mihalas, Hatice S Kaya-Okur, Abdullah H. Feroze, Samuel Emerson +10 more

RNA polymerase II at histone genes predicts outcome in human cancer

Science(2025)10.1126/science.ads2169

N/A

0.735DataRank · unranked

42 citations

Ye Zheng, Ronald M. Paranal, Yiling Xu, Jacob E. Greene, Jorja G. Henikoff +7 more

Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes

Cancer Discovery(2022)10.1158/2159-8290.cd-22-0692

N/A

0.641DataRank · unranked

71 citations

Robert D. Patton, Anna-Lisa Doebley, Brian Hanratty, Mohamed Adil, Adam J. Kreitzman +28 more

MLL oncoprotein levels influence leukemia lineage identities

Nature Communications(2024)10.1038/s41467-024-53399-8

N/A

0.418DataRank · unranked

9 citations

M. Durán, Dominik J. Otto, Weifang Wu, Joanna S. Yi, Danielle Kirkey +6 more

Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.21.496879

N/A

0.393DataRank · unranked

8 citations

Robert D. Patton, Anna-Lisa Doebley, Brian Hanratty, Adam J. Kreitzman, Jay F. Sarthy +28 more

Single-cell analysis of chromatin silencing programs in development and tumor progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.04.282418

N/A

0.385DataRank · unranked

12 citations

Scott N. Furlan, Anca B. Mihalas, Hatice S Kaya-Okur, Abdullah H. Feroze, Samuel Emerson +10 more

Cell-cycle-dependent repression of histone gene transcription by histone H4

Nature Structural & Molecular Biology(2026)10.1038/s41594-025-01731-1

N/A

0.241DataRank · unranked

4 citations

Matt Wooten, Brittany N. Takushi, Velinda Vidaurre, Xin Chen, Steven Henikoff +1 more

Cooperative Binding of Transcription Factors is a Hallmark of Active Enhancers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.253146

N/A

0.165DataRank · unranked

2 citations

Kami Ahmad, Srinivas Ramachandran, Satyanarayan Rao

KAS-CUT&Tag for direct mapping of transcription bubbles

10.64898/2026.05.15.725569

N/A

0.104DataRank · unranked

1 citations

Jacob E. Greene, Kami Ahmad, Steven Henikoff, Weifang Wu

The H3.3K27M oncohistone antagonizes reprogramming in Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.10.375881

N/A

0DataRank · unranked

1 citations

Steven Henikoff, Kami Ahmad

Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.15.043083

N/A

0DataRank · unranked

2 citations

Jorja G. Henikoff, Hatice S Kaya-Okur, Kami Ahmad, Steven Henikoff

Managing the Steady State Chromatin Landscape by Nucleosome Dynamics

Annual Review of Biochemistry(2022)10.1146/annurev-biochem-032620-104508

N/A

0DataRank · unranked

29 citations

Steven Henikoff, Srinivas Ramachandran, Kami Ahmad

In situ tools for chromatin structural epigenomics

Protein Science(2022)10.1002/pro.4458

N/A

0DataRank · unranked

13 citations

Kami Ahmad, Steven Henikoff

The nanoCUT&RUN technique visualizes telomeric chromatin in Drosophila

PLoS Genetics(2022)10.1371/journal.pgen.1010351

N/A

0DataRank · unranked

6 citations

Xiaolu Wei, Cécile Courret, Min Cui, Lin Cheng, Jing Wu +4 more

The nanoCUT&RUN technique visualizes telomeric chromatin in Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.20.488892

N/A

0DataRank · unranked

1 citations

Xiaolu Wei, Cécile Courret, Min Cui, Lin Cheng, Jing Wu +4 more

Epigenetic pioneering by SWI/SNF family remodelers

Molecular Cell(2023)10.1016/j.molcel.2023.10.045

N/A

0DataRank · unranked

68 citations

Sandipan Brahma, Steven Henikoff, Kami Ahmad

Scalable single-cell profiling of chromatin modifications with sciCUT&Tag

Nature Protocols(2023)10.1038/s41596-023-00905-9

N/A

0DataRank · unranked

27 citations

Jacob E. Greene, Steven J. Wu, Christine A. Codomo, Samuel S. Minot, Scott N. Furlan +3 more

Chromosome-specific maturation of the epigenome in the Drosophila male germline

eLife(2023)10.7554/elife.89373

N/A

0DataRank · unranked

18 citations

Steven Henikoff, Kami Ahmad, James T. Anderson

Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia

Nature Genetics(2021)10.1038/s41588-021-00941-9

N/A

0DataRank · unranked

99 citations

Michael P. Meers, Steven J. Wu, Ekaterina Babaeva, Soheil Meshinchi, Jay F. Sarthy +3 more

Chromosome-specific maturation of the epigenome in the Drosophila male germline

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.24.529909

N/A

0DataRank · unranked

3 citations

Steven Henikoff, Kami Ahmad, James M. Anderson

Chromosome-specific maturation of the epigenome in the Drosophila male germline

(2023)10.7554/elife.89373.2

N/A

0DataRank · unranked

2 citations

Steven Henikoff, Kami Ahmad, James Anderson

Data from Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes

(2023)10.1158/2159-8290.c.6549837.v1

N/A

0DataRank · unranked

0 citations

Robert D. Patton, Anna-Lisa Doebley, Brian Hanratty, Mohamed Adil, Adam J. Kreitzman +28 more

Data from Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes

(2023)10.1158/2159-8290.c.6549837.v2

N/A

0DataRank · unranked

0 citations

Robert D. Patton, Anna-Lisa Doebley, Brian Hanratty, Mohamed Adil, Adam J. Kreitzman +28 more

Reviewer #1 (Public Review): Chromosome-specific maturation of the epigenome in the Drosophila male germline

(2023)10.7554/elife.89373.2.sa1

N/A

0DataRank · unranked

0 citations

Steven Henikoff, Kami Ahmad, James Anderson

Author Response: Chromosome-specific maturation of the epigenome in the Drosophila male germline

(2023)10.7554/elife.89373.2.sa3

N/A

0DataRank · unranked

0 citations

Steven Henikoff, Kami Ahmad, James Anderson

Evolution: Heterochromatin Diversity in Early-Branching Land Plants

Current Biology(2020)10.1016/j.cub.2019.12.044

N/A

0DataRank · unranked

7 citations

Kami Ahmad, Steven Henikoff

Chromatin-bound U2AF2 splicing factor ensures exon inclusion

Molecular Cell(2025)10.1016/j.molcel.2025.04.013

N/A

0DataRank · unranked

9 citations

Kami Ahmad, Steven Henikoff, Weifang Wu

Total whole-arm chromosome losses predict malignancy in human cancer

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505385122

N/A

0DataRank · unranked

8 citations

Kami Ahmad, Steven Henikoff, Ye Zheng

Polycomb misregulation in enterocytes drives tissue decline in the aging Drosophila intestine

Genome Research(2025)10.1101/gr.281058.125

N/A

0DataRank · unranked

0 citations

Kami Ahmad, Steven Henikoff, Sarah M. Leichter

KMT2A oncoproteins induce epigenetic resistance to targeted therapies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.29.573681

N/A

0DataRank · unranked

6 citations

Melodie Duran, Dominik J. Otto, Weifang Wu, Joanna S. Yi, Danielle Kirkey +6 more

Simplified Epigenome Profiling Using Antibody-tethered Tagmentation

BIO-PROTOCOL(2021)10.21769/bioprotoc.4043

N/A

0DataRank · unranked

29 citations

Jorja G. Henikoff, Kami Ahmad, Steven Henikoff

The H3.3K27M oncohistone antagonizes reprogramming in Drosophila

PLoS Genetics(2021)10.1371/journal.pgen.1009225

N/A

0DataRank · unranked

20 citations

Steven Henikoff, Kami Ahmad

Simultaneous CUT&Tag profiling of the accessible and silenced regulome in single cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.19.473377

N/A

0DataRank · unranked

1 citations

Dominik J. Otto, Michael P. Meers, Manu Setty, Kami Ahmad, Steven Henikoff +1 more

Kami Ahmad

Indexed papers

Top data-sharing exemplar

Papers